Sequences for RATNO24252

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO24252 (A6I5P9)

E Rattus norvegicus | Phospholipid phosphatase 1 [Plpp1]

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Orthologs 432

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 940
Gene information
GO Annotations
Sequences/Isoforms 5
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO24251	282			6	A0A8I5ZMN4
	RATNO24253	272			5	A0A8I5ZS66
	RATNO24254	299			6	A0A8I6ALW0
	RATNO24255	267			5	A0A8I5ZRC4
	RATNO24252 reference isoform	283			6	A6I5P9

Protein Sequence

Download: Fasta

MFDKTRLPYV VLDVICVLLA SMPMAVVNLG QIYPFQRGFF CSDNSVKYPY HDSTVTTSVL    60
VLVGLGIPIF SMITGETLSV YFNVLHSNSF VSNHYIATIY KAVGAFLFGA SASQSLTDIA   120
KYSIGRLRPH FLAVCNPDWS KINCSDGYIE NFVCQGNEQK VREGRLSFYS GHSSFSMYCM   180
LFVALYLQAR MKGDWARLLR PMLQFGLVAL SIYVGLSRVS DYKHHWSDVL IGLIQGAVVA   240
ILVVLYVTDF FKTTESNKER KEDSHTTLHE TSNRQSYARN HEP                     283

cDNA Sequence

Download: Fasta

ATGTTCGACA AGACGCGGCT GCCGTACGTG GTCCTCGATG TGATTTGCGT GTTGCTGGCT    60
TCCATGCCTA TGGCTGTTGT AAATTTGGGC CAAATATATC CATTTCAGAG AGGCTTTTTC   120
TGTTCTGACA ACAGCGTGAA GTACCCGTAC CATGACAGTA CCGTCACAAC CAGTGTACTC   180
GTCCTAGTGG GGCTTGGCAT ACCCATTTTC TCTATGATTA CTGGAGAAAC TCTGTCTGTT   240
TACTTTAATG TCTTGCATTC AAATTCCTTT GTCAGCAATC ACTATATAGC CACCATTTAC   300
AAAGCCGTTG GAGCCTTTTT GTTTGGAGCC TCAGCCAGTC AGTCCCTGAC TGACATTGCT   360
AAGTACTCTA TAGGCAGACT GCGGCCTCAC TTCCTGGCTG TCTGTAACCC AGACTGGTCA   420
AAAATCAACT GCAGCGATGG CTACATTGAG AACTTCGTAT GTCAAGGGAA TGAACAGAAG   480
GTCAGGGAAG GCAGGTTGTC CTTCTACTCG GGGCACTCCT CATTCTCTAT GTACTGCATG   540
CTGTTTGTCG CACTTTATCT TCAAGCCAGG ATGAAGGGAG ATTGGGCAAG ACTCTTACGA   600
CCCATGCTAC AGTTTGGGCT TGTTGCTTTA TCCATATATG TGGGCCTGTC TCGAGTTTCT   660
GATTACAAAC ACCACTGGAG CGACGTGTTA ATTGGCCTCA TTCAAGGAGC TGTTGTGGCA   720
ATATTAGTGG TTTTGTATGT AACTGATTTC TTCAAGACCA CAGAGTCTAA CAAAGAAAGA   780
AAAGAGGACT CACACACGAC TCTACACGAA ACCAGCAACA GACAGAGCTA CGCAAGGAAT   840
CATGAGCCCT GA                                                       852