Sequences for RATNO20975

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO20975 (A0A8I5ZNX3)

E Rattus norvegicus | IQ motif containing K [Iqck]

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Orthologs 88

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO20974	288			9	D3ZTH1
	RATNO20975 reference isoform	288			9	A0A8I5ZNX3

Protein Sequence

Download: Fasta

MAVPRQASSL SVLREETGGA ADSPVTTRMP GLAGSPGSPE VLVLPAQVAE PPGKNLWEQI    60
CEEYEAEQPT FPEGYKVKQE AAVTVTPLEE LVPHGFNMEH YLPVQQFPVT PPVPCPPKKA   120
ETVEPKTCSP RDYLEMFIFP VLLPGMANLL HQAKREKCFE RKRTKFIACD FLTEWLYNQN   180
PKRAGEPFTE FFSIPFVEEW LADHPRPPIP LSLLLTEEEA AVRIQAFWRA YLVRCDPEIQ   240
ELRQWQKKLR EDKHIRQRVK MFWAKQEQKM KCKMEDEEEE PAASVPNP                288

cDNA Sequence

Download: Fasta

ATGGCCGTGC CTAGACAAGC ATCCAGCCTC AGCGTGCTGC GTGAGGAGAC GGGAGGCGCT    60
GCGGACTCGC CGGTCACTAC ACGAATGCCC GGGCTCGCAG GGTCGCCTGG GTCCCCCGAA   120
GTTCTCGTGT TACCCGCGCA GGTCGCCGAG CCTCCGGGGA AGAACCTGTG GGAGCAGATC   180
TGCGAGGAGT ATGAAGCCGA GCAGCCTACC TTTCCGGAAG GATATAAAGT GAAGCAGGAA   240
GCTGCAGTCA CGGTCACACC CTTGGAGGAA CTGGTTCCGC ATGGCTTCAA CATGGAGCAC   300
TATCTCCCAG TGCAGCAGTT CCCAGTGACG CCTCCTGTGC CCTGTCCTCC CAAGAAGGCA   360
GAAACAGTCG AGCCCAAGAC CTGTTCTCCC AGAGATTATC TGGAAATGTT TATCTTTCCA   420
GTTCTGCTCC CCGGAATGGC CAACTTGCTT CACCAAGCAA AAAGAGAAAA ATGTTTTGAG   480
AGGAAGAGAA CCAAATTCAT TGCCTGCGAT TTCCTGACTG AGTGGCTGTA CAACCAGAAT   540
CCAAAGAGGG CAGGGGAGCC ATTCACAGAA TTCTTCTCCA TTCCATTTGT GGAGGAATGG   600
CTCGCGGACC ACCCGAGGCC TCCAATCCCT CTCTCCCTGC TACTGACAGA AGAAGAAGCA   660
GCAGTCAGAA TCCAGGCCTT CTGGAGAGCC TATCTGGTTC GCTGTGACCC TGAGATTCAG   720
GAGCTGCGGC AGTGGCAGAA GAAGCTGCGT GAGGACAAGC ACATCCGCCA GCGTGTGAAA   780
ATGTTCTGGG CCAAACAAGA GCAGAAAATG AAATGTAAAA TGGAGGATGA GGAAGAAGAG   840
CCTGCTGCCT CAGTACCAAA TCCTTAG                                       867