Sequences for RATNO11689

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO11689 (A0A8I6AB66)

E Rattus norvegicus | Leucine rich repeat containing 18 [Lrrc18]

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Orthologs 160

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 47
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO11690	256			2	LRC18_RAT
	RATNO11689 reference isoform	262			2	A0A8I6AB66

Protein Sequence

Download: Fasta

MAKGGKSPKG KKITLNVAKN CIKITFDGRK RLDLSKMGIT TFPKCILRLN EIDELDLSRN    60
MIRKIPDSIS KFQNLRWLDL HSNYIDKLPE SIGQMTSLLF LNVSNNRLTT NGLPVELNQL   120
KNIRTVNLGL NHLDSVPTTL GALKELHEVG LHDNLLTSIP AGISKLPKLK KLNVKRNPFP   180
KPDESDMFVD SIKRLENLYL VEEKDLCSSC LQKCQQARDK LNKIRSMAPS APRKAIFSNL   240
VSPNSTAKES QEEWRLRSPS TS                                            262

cDNA Sequence

Download: Fasta

ATGGCCAAGG GCGGGAAAAG CCCCAAGGGC AAAAAGATCA CCCTTAATGT GGCAAAGAAT    60
TGTATCAAAA TCACATTCGA TGGGAGAAAG CGTCTTGATC TGAGCAAGAT GGGAATCACC   120
ACCTTCCCCA AGTGTATCTT ACGGCTCAAT GAGATAGATG AGCTCGATCT TAGCCGGAAT   180
ATGATCAGAA AAATTCCCGA CTCCATCTCC AAGTTCCAGA ATCTGCGATG GCTCGACCTG   240
CACAGTAACT ATATTGACAA ACTCCCCGAG TCCATTGGCC AGATGACCTC CCTGCTCTTC   300
CTCAATGTCA GTAACAACAG GCTGACCACC AACGGGCTAC CCGTGGAGCT GAACCAGCTC   360
AAGAACATCC GCACCGTGAA TCTGGGCCTT AACCACCTGG ACAGCGTGCC CACCACACTG   420
GGGGCACTGA AGGAGCTCCA TGAGGTGGGG CTACACGACA ATCTGCTGAC CTCTATCCCT   480
GCCGGCATCT CCAAGCTTCC CAAACTGAAG AAGCTCAACG TAAAGAGGAA CCCCTTCCCA   540
AAACCAGATG AGTCAGACAT GTTTGTAGAC TCCATCAAAA GGCTAGAAAA CCTCTATCTG   600
GTGGAAGAGA AGGATCTGTG TTCCTCTTGC CTGCAAAAAT GCCAACAGGC CAGGGACAAG   660
TTGAACAAAA TCAGGAGCAT GGCCCCCTCT GCACCGAGAA AGGCCATCTT TTCCAATTTG   720
GTTTCACCCA ACTCAACAGC CAAGGAATCC CAGGAAGAAT GGAGGTTACG CTCACCATCC   780
ACCTCCTAG                                                           789