Sequences for RATNO11218

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO11218 (A0A8I6AEC4)

E Rattus norvegicus | CCR4-NOT transcription complex subunit 7 [Cnot7]

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Orthologs 1064

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 424
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO11217 reference isoform	285			6	A6JPV7
	RATNO11218	248			5	A0A8I6AEC4

Protein Sequence

Download: Fasta

MPAATVDHSQ RICEVWACNL DEEMKKIRQV IRKYNYVAMD TEFPGVVARP IGEFRSNADY    60
QYQLLRCNVD LLKIIQLGLT FMNEQGEYPP GTSTWQFNFK FNLTEDMYAQ DSIELLTTSG   120
IQFKKHEEEG IETQYFAELL MTSGVVLCEG VKWLSFHSGY DFGYLIKILT NSNLPEEELD   180
FFEILRLFFP VIYDVKYLMK SCKNLKGGLQ EVAEQLELER IGPQHQAGSD SLLTGMAFFK   240
MREMFFEDHI DDAKYCGHLY GLGSGSSYVQ NGTGNAYEEE ASKQS                   285

cDNA Sequence

Download: Fasta

ATGCCAGCAG CAACTGTAGA TCATAGCCAA AGAATTTGTG AAGTTTGGGC TTGTAACCTG    60
GATGAAGAGA TGAAGAAAAT CCGTCAAGTT ATCCGAAAAT ATAATTATGT TGCTATGGAC   120
ACCGAGTTTC CAGGCGTTGT TGCAAGGCCC ATTGGAGAAT TCAGAAGCAA TGCTGACTAT   180
CAGTACCAAC TGTTGCGATG TAATGTAGAC TTGTTAAAGA TAATTCAGCT TGGACTGACA   240
TTTATGAATG AGCAAGGAGA ATACCCTCCA GGAACATCAA CTTGGCAGTT TAATTTTAAA   300
TTTAATTTGA CGGAGGACAT GTATGCTCAG GACTCTATAG AGCTACTGAC AACGTCTGGC   360
ATCCAGTTTA AAAAACATGA GGAGGAAGGG ATTGAGACCC AGTATTTTGC AGAACTTCTT   420
ATGACCTCAG GAGTGGTTCT CTGTGAAGGG GTCAAATGGT TATCATTTCA TAGTGGTTAT   480
GACTTTGGCT ATTTAATCAA AATTCTGACC AACTCTAACT TGCCTGAAGA AGAGCTTGAT   540
TTCTTTGAGA TCCTTCGATT ATTCTTCCCT GTCATCTATG ATGTGAAGTA CCTCATGAAG   600
AGCTGCAAGA ACCTCAAGGG TGGACTGCAG GAAGTTGCTG AGCAGTTAGA GCTGGAGCGG   660
ATAGGACCTC AACACCAGGC AGGATCTGAC TCACTGCTTA CAGGAATGGC CTTTTTCAAA   720
ATGAGAGAAA TGTTCTTTGA AGATCACATT GATGATGCCA AATACTGTGG CCACTTATAC   780
GGCCTTGGTT CTGGCTCATC CTATGTACAG AACGGCACAG GGAATGCATA TGAAGAGGAA   840
GCCAGCAAGC AGTCGTGA                                                 858