Sequences for RATNO10842

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO10842 (TM2D2_RAT)

E Rattus norvegicus | TM2 domain-containing protein 2 [Tm2d2]

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Orthologs 291

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 13
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO10843	112			2	Q566R2
	RATNO10842 reference isoform	213			4	TM2D2_RAT

Protein Sequence

Download: Fasta

MVLGGCPVSY LLLCGQAALL LGNLLLLHCV SRSHSFNATA ELDLTPSGAA HLEGPAASSW    60
EYSDPNSPVI LCSYLPDEFV DCDAPVDHVG NATAYQELGY GCLKFGGQAY SDVEHTAVQC   120
RALEGIECAS PRTFLRKNKP CIKYTGHYFI TTLLYSFFLG CFGVDRFCLG HTGTAVGKLL   180
TLGGLGIWWF VDLILLITGG LMPSDGSNWC TVY                                213

cDNA Sequence

Download: Fasta

ATGGTGCTGG GCGGTTGCCC TGTGAGTTAC CTATTGCTAT GCGGCCAGGC GGCCTTGCTT    60
TTGGGGAACC TGCTGCTGCT GCACTGTGTC TCTCGGAGCC ACTCGTTTAA TGCTACGGCC   120
GAACTGGATC TCACCCCCTC AGGCGCCGCT CACCTCGAGG GTCCCGCGGC CTCGAGCTGG   180
GAATACAGTG ACCCCAACTC TCCAGTCATC CTTTGCTCTT ACCTACCCGA CGAGTTTGTA   240
GATTGCGATG CCCCAGTGGA TCACGTTGGA AATGCAACTG CATACCAGGA ACTTGGTTAT   300
GGTTGTCTCA AGTTTGGGGG TCAGGCCTAC AGTGATGTGG AACACACTGC AGTCCAGTGC   360
AGAGCCCTGG AGGGAATCGA GTGTGCCAGC CCCAGGACCT TCCTACGAAA AAATAAGCCT   420
TGTATAAAGT ACACTGGACA CTACTTCATA ACCACGCTTC TCTACTCCTT CTTCCTGGGA   480
TGCTTCGGAG TCGACCGCTT CTGTCTGGGA CACACTGGAA CAGCGGTTGG GAAGCTGCTA   540
ACCCTTGGAG GACTGGGGAT CTGGTGGTTC GTCGATCTTA TTTTGCTCAT CACTGGGGGG   600
CTGATGCCTA GTGACGGCAG CAACTGGTGT ACTGTCTACT AA                      642