Sequences for RATNO07359

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO07359 (A6IDP4)

E Rattus norvegicus | Similar to novel protein (Predicted) | Spermatogenesis associated 46 [Spata46]

‹

Orthologs 85

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO07359 reference isoform	204			2	A6IDP4

Protein Sequence

Download: Fasta

MENFSLLSTS RPRISSSALS AFPDIMSSLA TSLPDLGDTQ NGEQLRRNCT IYRPWFSPYS    60
YFVCTDKESH LEAYGFPEVD REEGRGDNCL LEDVAESVCS SSSSQENTYP REANKKSKHG   120
LDSITSQDIL MASKWHPAQQ NGYKCAACCR MYPTLHSLKS HIKGGFKEGF SCKVYYRKLK   180
TLWGKEQKAR TGDRISLGSC QAFK                                          204

cDNA Sequence

Download: Fasta

ATGGAGAATT TCTCACTCCT CAGCACCTCC AGACCTCGTA TCTCTTCCTC TGCCCTGAGT    60
GCTTTTCCCG ACATTATGTC CTCACTTGCG ACCAGCTTGC CAGACTTGGG GGACACCCAG   120
AATGGGGAGC AGCTGAGGCG GAACTGCACC ATCTACCGAC CCTGGTTCTC CCCTTACAGC   180
TACTTCGTAT GCACGGACAA AGAGAGCCAC CTGGAGGCCT ATGGGTTCCC AGAGGTGGAC   240
CGGGAAGAGG GCAGAGGGGA TAACTGCCTT CTTGAGGATG TGGCTGAGAG TGTCTGCTCA   300
TCTTCTTCCT CCCAAGAGAA CACATACCCC AGGGAGGCCA ACAAGAAATC CAAGCATGGT   360
TTGGATTCGA TCACATCCCA GGACATCTTA ATGGCTTCCA AGTGGCACCC AGCCCAGCAG   420
AATGGCTACA AGTGTGCAGC CTGTTGCCGC ATGTACCCCA CTCTGCACTC TCTCAAGAGC   480
CACATCAAGG GGGGTTTCAA GGAGGGTTTC AGCTGCAAAG TGTACTACCG CAAGCTCAAA   540
ACCCTCTGGG GCAAGGAGCA AAAGGCCCGG ACAGGAGATA GGATCTCCTT GGGCAGCTGC   600
CAGGCCTTCA AGTAG                                                    615