Sequences for RATNO05790

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO05790 (F1LYU9)

E Rattus norvegicus | RCG58956-like [Cd209fl1]

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Orthologs 65

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 2
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO05790 reference isoform	259			8	F1LYU9

Protein Sequence

Download: Fasta

MAGKPELHQL NNHEEEVTLE DQGFAENDPE GLICSSKSLQ GHLTRAPWLL LLLISLGLFL    60
LMLAILVQVS RICANPQGQT QDQKGSSSLG KVAVPQEQTH TGLEQIQQIQ QIQQQLTQFN   120
ASLAGLCRPC PWDWEFFQGS CYLFSRTLAS WGASASSCKD LGAHLVIINS VAEQRFMKYW   180
NVRKNQRSWI GLSDHLREGS WQWVDHSPLK FSFWKEGEPN NDGDEDCVEL FMDEWNDNTC   240
TQQNFWVCEQ PSAPCPGHG                                                259

cDNA Sequence

Download: Fasta

ATGGCAGGAA AGCCAGAGCT CCACCAGCTG AACAACCATG AGGAGGAGGT CACATTGGAA    60
GACCAGGGAT TTGCTGAGAA TGACCCCGAG GGTCTCATTT GCAGCTCCAA GAGTTTGCAA   120
GGACATCTGA CCCGAGCCCC CTGGCTTCTG CTGCTTCTCA TCTCTTTGGG CCTCTTTTTG   180
CTTATGTTGG CCATCCTGGT TCAAGTTTCC AGGATCTGTG CAAACCCACA GGGACAGACC   240
CAGGATCAGA AGGGGAGTTC CAGCTTGGGG AAAGTTGCTG TTCCTCAGGA GCAGACACAC   300
ACTGGCTTGG AGCAGATCCA GCAGATCCAG CAGATCCAGC AGCAGCTGAC TCAGTTCAAT   360
GCCTCGCTGG CTGGCCTGTG CCGGCCCTGT CCCTGGGACT GGGAGTTCTT CCAGGGAAGC   420
TGCTACCTCT TCTCGAGAAC CCTGGCCAGC TGGGGAGCCT CTGCCTCCTC CTGCAAGGAT   480
CTTGGGGCCC ACCTGGTGAT CATCAACAGT GTTGCAGAGC AGAGATTCAT GAAATATTGG   540
AATGTGAGGA AAAACCAACG TTCCTGGATC GGCCTCAGTG ACCATTTACG CGAGGGTTCC   600
TGGCAATGGG TGGATCACAG CCCTCTCAAG TTCAGCTTTT GGAAAGAGGG GGAGCCTAAC   660
AATGACGGGG ATGAGGACTG CGTGGAGCTG TTCATGGATG AGTGGAATGA TAATACGTGC   720
ACCCAGCAAA ACTTCTGGGT CTGTGAGCAG CCCTCGGCTC CCTGCCCTGG CCATGGANNN   780