Sequences for RATNO03870

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO03870 (A0A0G2K8K8)

E Rattus norvegicus | Immunoglobulin lambda constant 1 [Iglc1]

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Orthologs 355

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 53
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO03870 reference isoform	121			2	A0A0G2K8K8

Protein Sequence

Download: Fasta

MSQCWVLGKG TRLTVLDQPK ATPSVTLFPP SSEELKTDKA TLVCMVTDFY PGVMTVVWKA    60
DGTPITQGVE TTQPFKQNNK YMATSYLLLT AKAWETHSNY SCQVTHEENT VEKSLSRAEC   120
S                                                                   121

cDNA Sequence

Download: Fasta

ATGTCACAGT GTTGGGTACT CGGTAAAGGA ACCAGATTGA CTGTCCTAGA CCAACCCAAG    60
GCTACGCCCT CAGTCACCCT GTTCCCACCT TCCTCTGAAG AGCTCAAGAC TGACAAGGCT   120
ACACTGGTGT GTATGGTGAC AGATTTCTAC CCTGGTGTTA TGACAGTGGT CTGGAAGGCA   180
GATGGTACCC CTATCACTCA GGGTGTGGAG ACTACCCAGC CTTTCAAACA GAACAACAAG   240
TACATGGCTA CCAGCTACCT GCTTTTGACA GCAAAAGCAT GGGAGACTCA TAGCAATTAC   300
AGCTGCCAGG TCACTCACGA AGAGAACACT GTGGAGAAGA GTTTGTCCCG TGCTGAGTGT   360
TCCTAG                                                              366