Sequences for RATNO01459

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO01459 (B2BKZ7)

E Rattus norvegicus | A030009H04Rik [Rnf227]

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Orthologs 87

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO01459 reference isoform	190			2	B2BKZ7

Protein Sequence

Download: Fasta

MQLLMRVPSL PELGELDCNI CFRPYNLGAR APRRLPGTAR ARCGHTLCTA CLRELAARGD    60
GSRTAARVVR LRRVVTCPFC RAPSPLPRGG ITEIALDPDL WSRLEEEAQA ECEGDPMGSP   120
AKESGEDGED DDGEQESEMG AGPSSAGWRA LRRILDRVLA PARRLRRPLP SNVLYCPEVK   180
DIAHMTRCTL                                                          190

cDNA Sequence

Download: Fasta

ATGCAGCTCC TGATGAGAGT GCCCTCTCTT CCCGAGCTGG GTGAGCTGGA CTGCAACATC    60
TGCTTCCGAC CCTACAACCT CGGGGCCCGC GCTCCCCGCC GCCTGCCTGG CACGGCGCGC   120
GCCCGCTGCG GCCACACGTT GTGCACCGCT TGCCTGCGCG AGCTGGCAGC GCGGGGAGAC   180
GGCAGCCGCA CGGCCGCGCG TGTGGTGCGC CTGCGCCGTG TTGTCACGTG CCCGTTCTGC   240
CGCGCGCCTT CCCCGCTCCC GCGCGGCGGC ATCACGGAGA TCGCGCTAGA TCCTGACTTG   300
TGGTCACGGC TGGAGGAAGA AGCCCAGGCT GAGTGTGAAG GAGACCCGAT GGGGAGCCCG   360
GCCAAAGAAA GCGGAGAGGA TGGAGAGGAC GACGACGGGG AACAGGAGAG CGAGATGGGG   420
GCGGGACCTT CAAGTGCCGG TTGGCGCGCG CTTCGCCGAA TTTTGGACAG GGTCCTGGCG   480
CCCGCGCGCC GCTTGCGGCG TCCGTTGCCT AGCAATGTGC TCTACTGTCC AGAGGTCAAG   540
GACATTGCCC ACATGACGCG TTGTACGCTG TGA                                573