Sequences for RATNO00678

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO00678 (CRBA1_RAT)

E Rattus norvegicus | Beta-crystallin A3 [Cryba1]

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Orthologs 159

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RATNO00679	208			6	A0A8I6GIJ4
	RATNO00678 reference isoform	215			6	CRBA1_RAT

Protein Sequence

Download: Fasta

METQTVQREL ETLPTTKMAQ TNPMPGSMGP WKITIYDQEN FQGKRMEFTS SCPNVSERSF    60
DNVRSLKVEC GAWIGYEHTS FCGQQFILER GEYPRWDAWS GSNAYHIERL MSFRPICSAN   120
HKESKITIFE KENFIGRQWE ICDDYPSLQA MGWFNNEVGS MKIQCGAWVC YQYPGYRGYQ   180
YILECDHHGG DYKHWREWGT HAQTSQIQSI RRIQQ                              215

cDNA Sequence

Download: Fasta

ATGGAGACCC AGACTGTGCA GCGGGAGCTG GAAACTCTTC CAACCACCAA GATGGCTCAG    60
ACCAACCCTA TGCCAGGGTC CATGGGGCCA TGGAAGATAA CCATCTATGA TCAGGAGAAC   120
TTCCAGGGCA AGAGGATGGA GTTCACCAGC TCCTGCCCAA ATGTCTCTGA ACGTAGTTTT   180
GATAATGTCC GGTCACTTAA GGTGGAGTGT GGCGCCTGGA TTGGTTATGA GCACACCAGC   240
TTCTGTGGGC AACAGTTCAT CCTGGAGAGA GGAGAATACC CTCGATGGGA TGCCTGGAGT   300
GGGAGCAATG CCTATCATAT TGAGCGTCTC ATGTCCTTCC GACCCATCTG TTCTGCTAAT   360
CATAAAGAGT CTAAGATCAC CATCTTTGAG AAAGAGAACT TTATTGGACG CCAGTGGGAG   420
ATCTGTGATG ACTACCCTTC CTTACAAGCC ATGGGTTGGT TCAACAATGA AGTGGGTTCC   480
ATGAAGATAC AGTGTGGAGC TTGGGTTTGC TACCAGTATC CTGGATATCG TGGTTATCAG   540
TATATCTTGG AATGTGACCA TCACGGAGGA GACTACAAAC ACTGGAGAGA GTGGGGAACT   600
CATGCTCAGA CTTCTCAGAT CCAATCAATT CGCCGAATAC AACAATAG                648