Sequences for RABIT11431

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RABIT11431 (G1SCP9)

E Oryctolagus cuniculus | Serine rich single-pass membrane protein 1 [SSMEM1]

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Orthologs 75

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	RABIT11431 reference isoform	244			3	G1SCP9

Protein Sequence

Download: Fasta

MGDLFSLFWE VDPPPIPLSL TIPNQDAECR KDDSCGTIGS FLLWYFVVIL VLMLCSRASI    60
WMSEYKKDED SGTSASVSKA SKDPYYKRQN KDGPWDSSET MKKPKQSQFT PVTDSEVALI   120
NAYLEQKRAK LHFQFNQVNQ NHRDSDTSEC DTEESNSGAS SWKESESEHQ PSPVSVMRRK   180
IAQRQRSLVS YQIRERPCLH CKAMRTNEWL TRHFLQNTSI ATPMKGDTQE DTSTPEINTK   240
FSKF                                                                244

cDNA Sequence

Download: Fasta

ATGGGAGACC TCTTTTCCTT ATTTTGGGAG GTAGATCCTC CCCCCATACC TTTAAGTCTT    60
ACCATTCCAA ACCAGGATGC TGAGTGCCGG AAGGATGACT CTTGTGGGAC GATAGGGAGC   120
TTCCTGCTTT GGTATTTTGT CGTTATCTTG GTCCTGATGC TCTGCTCTCG GGCTTCTATC   180
TGGATGTCTG AGTATAAAAA GGATGAAGAC AGTGGGACAA GTGCTTCAGT AAGTAAAGCA   240
AGCAAAGATC CTTACTATAA GCGGCAAAAC AAAGATGGTC CCTGGGACTC TTCAGAAACG   300
ATGAAGAAAC CAAAGCAGAG CCAGTTCACC CCTGTAACTG ACTCAGAAGT GGCTTTGATC   360
AATGCCTATC TTGAACAAAA GCGAGCCAAG CTCCATTTTC AGTTCAACCA AGTGAATCAG   420
AACCATCGTG ATAGCGACAC CAGTGAGTGC GACACTGAAG AGTCTAACTC GGGAGCCTCC   480
TCATGGAAGG AGAGTGAAAG TGAACACCAG CCATCACCAG TCAGTGTTAT GAGGAGAAAA   540
ATAGCACAGA GGCAAAGGAG TCTGGTTAGT TACCAAATTC GGGAGAGGCC CTGCCTCCAC   600
TGCAAGGCCA TGAGGACCAA TGAATGGCTG ACACGCCATT TCCTACAAAA CACTTCGATA   660
GCAACCCCCA TGAAGGGAGA TACTCAAGAG GATACGTCTA CCCCTGAAAT TAACACAAAA   720
TTCAGTAAAT TTTGA                                                    735