Sequences for PSETE13125

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PSETE13125 (A0A670YM54)

E Pseudonaja textilis | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase [HACD2]

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Orthologs 924

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 444
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	PSETE13126	133			4	A0A670YJW2
	PSETE13125 reference isoform	256			7	A0A670YM54

Protein Sequence

Download: Fasta

MAASGSCSGS GRRPESGSES KSPQLQQAGG RRRRGPGALA TAYLVLYNVV MTAGWLVIAV    60
GLVRAYLATG SYHKLYHSIE KPLKFFQTGA LLEIVHCAIG IVPSSVVLTA FQIMSRVFLT   120
WGIAHSVKEV QSEDSILLFV VAWTITEIIR YSFYTFSLLN HLPYFIKWAR YTLFIILYPM   180
GVTGEMLTMY AALPFVKRSG LFSISLPNKY NFSFDYYTFL ILVMLTYIPS FPQLYFHMLH   240
QRRKVLSVTE EHKKSE                                                   256

cDNA Sequence

Download: Fasta

ATGGCGGCGT CCGGGAGCTG CAGCGGGAGC GGCCGCCGGC CAGAGAGCGG CTCCGAGAGC    60
AAAAGCCCGC AGCTTCAGCA GGCCGGCGGC CGGCGGCGGA GAGGCCCCGG CGCCTTAGCG   120
ACGGCCTATC TAGTCCTTTA CAACGTGGTC ATGACCGCCG GGTGGCTTGT TATAGCAGTT   180
GGTTTAGTCA GAGCATACCT TGCAACAGGT AGCTATCATA AACTCTATCA TTCAATAGAA   240
AAGCCTTTGA AATTCTTCCA GACTGGAGCT TTGCTTGAGA TCGTGCACTG TGCAATAGGG   300
ATTGTTCCTT CTTCTGTTGT CTTGACTGCT TTCCAAATCA TGTCAAGAGT TTTTTTGACA   360
TGGGGTATAG CCCACAGTGT AAAAGAGGTG CAAAGTGAAG ACAGCATCCT TCTTTTTGTG   420
GTCGCCTGGA CGATCACAGA GATCATCCGT TACTCCTTCT ACACATTTAG TTTACTAAAC   480
CACCTTCCTT ATTTTATCAA GTGGGCCAGG TATACTTTAT TCATCATACT ATATCCAATG   540
GGAGTTACTG GAGAAATGCT CACAATGTAT GCTGCTCTGC CCTTTGTCAA GCGATCTGGT   600
TTATTTTCTA TTAGTTTACC TAACAAATAT AATTTTTCAT TTGACTACTA CACATTTCTG   660
ATCCTGGTCA TGCTAACTTA CATTCCAAGC TTCCCTCAGC TGTATTTTCA CATGTTACAT   720
CAGAGAAGAA AAGTGCTTTC TGTTACTGAA GAACACAAGA AATCTGAATA A            771