Sequences for PROCO23888

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PROCO23888 (A0A2K6EK88)

E Propithecus coquereli | Pancreas/duodenum homeobox protein 1 [PDX1]

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Orthologs 161

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	PROCO23888 reference isoform	282			2	A0A2K6EK88

Protein Sequence

Download: Fasta

MNGEEQYYAA TQLYKDPCAF QRGPAPEFSA SPPACLYMGR QPPPPPPPFP GALGTLEQGS    60
PPDISPYEVP PLADDPAVAQ LHHHLPAQLA LPHPPAGPFP DGAEPGALEE HSRVQLPFPW   120
MKSTKAHAWK GQWTGGAYAA EPEENKRTRT AYTRAQLLEL EKEFLFNKYI SRPRRVELAV   180
MLNLTERHIK IWFQNRRMKW KKEEDKKRGG GTAAGGGGVA EPEQDCAVTS GEEMLALPPP   240
PPPGGAVPPA APVSAREGRL PPGLSASPQP SSVAPRRPQE PR                      282

cDNA Sequence

Download: Fasta

ATGAACGGCG AGGAGCAGTA CTACGCGGCC ACGCAGCTGT ACAAGGACCC GTGCGCGTTC    60
CAGCGCGGCC CGGCGCCGGA GTTCAGCGCC AGCCCCCCTG CGTGCCTATA CATGGGCCGC   120
CAGCCCCCGC CGCCGCCGCC CCCGTTCCCC GGCGCCCTGG GCACGCTGGA GCAGGGCAGC   180
CCCCCGGACA TCTCCCCGTA CGAGGTGCCG CCCCTCGCCG ACGACCCCGC GGTGGCGCAG   240
CTCCACCATC ACCTCCCTGC TCAGCTCGCG CTTCCCCACC CGCCCGCCGG GCCCTTCCCG   300
GATGGAGCCG AGCCGGGTGC CCTGGAGGAG CACAGCCGCG TCCAGCTGCC TTTTCCGTGG   360
ATGAAGTCTA CCAAAGCTCA TGCGTGGAAA GGCCAGTGGA CAGGCGGCGC CTACGCAGCA   420
GAGCCTGAGG AGAACAAGCG GACGCGCACC GCCTACACGC GCGCGCAGCT GCTCGAGTTG   480
GAGAAGGAAT TCCTATTCAA CAAGTACATC TCGCGGCCGC GCCGGGTGGA GCTGGCCGTA   540
ATGCTGAACT TGACCGAGAG ACACATCAAG ATCTGGTTCC AAAACCGCCG CATGAAGTGG   600
AAGAAAGAGG AGGACAAGAA GCGAGGCGGC GGTACAGCGG CCGGGGGTGG CGGGGTCGCA   660
GAGCCAGAGC AGGACTGCGC AGTGACCTCG GGCGAGGAGA TGCTGGCGCT GCCGCCGCCG   720
CCACCCCCCG GGGGTGCTGT GCCGCCCGCT GCCCCGGTCT CTGCCCGGGA GGGCCGCCTA   780
CCGCCCGGCC TTAGTGCGTC GCCGCAGCCC TCCAGTGTCG CGCCTCGGCG GCCCCAGGAA   840
CCACGGTGA                                                           849