Sequences for PIGXX12984

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PIGXX12984 (MLRA_PIG)

E Sus scrofa | Myosin regulatory light chain 2, atrial isoform [MYL7]

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Orthologs 363

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1054
Gene information
GO Annotations
Sequences/Isoforms 5
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	PIGXX12981	624			11	ENSSSCG00000016751.3
	PIGXX12982	483			12	A0A8D0ZHJ4
	PIGXX12983	465			10	A0A8D1L8T4
	PIGXX12985	173			7	ENSSSCG00000016751.3
	PIGXX12984 reference isoform	175			7	MLRA_PIG

Protein Sequence

Download: Fasta

MASRKAGTRS KAAATKQAQR GSSNVFSMFE QAQIQEFKEA FSCIDQNRDG IICKSDLRET    60
YSQLGKVNVP EEELDAMLQE GKGPINFTVF LTLFGEKLNG TDPEEAILSA FRLFDPSGKG   120
VVNKDQFKQL LLTQADKFSP AEVEQMFALT PMDLAGNIDY KSLCYIITHG DEKEE        175

cDNA Sequence

Download: Fasta

ATGGCCAGCA GAAAGGCGGG GACCCGGAGC AAGGCCGCGG CCACCAAGCA GGCCCAGCGA    60
GGCTCTTCCA ATGTCTTTTC CATGTTCGAG CAAGCCCAGA TCCAAGAGTT CAAGGAAGCC   120
TTCAGCTGCA TCGACCAGAA CCGTGATGGC ATCATCTGCA AGTCAGACCT TCGAGAGACC   180
TACTCCCAGC TGGGGAAGGT GAATGTTCCA GAAGAGGAGC TGGATGCCAT GCTGCAGGAA   240
GGGAAGGGGC CCATCAACTT CACCGTCTTC CTCACGTTGT TCGGGGAGAA GCTCAACGGG   300
ACAGACCCCG AAGAAGCCAT CCTGAGCGCC TTCCGCCTGT TTGACCCCAG CGGCAAGGGC   360
GTGGTGAACA AGGACCAGTT CAAGCAGCTT CTCCTGACCC AGGCAGACAA GTTCTCTCCG   420
GCCGAGGTGG AGCAGATGTT CGCCCTGACG CCCATGGACC TGGCCGGGAA CATTGACTAC   480
AAGTCCCTGT GCTACATTAT CACCCACGGG GACGAGAAAG AGGAGTGA                528