Sequences for PIGXX08978

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PIGXX08978 (A0A4X1SE54)

E Sus scrofa | Coiled-coil domain containing 115 [CCDC115]

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Orthologs 219

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 3
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	PIGXX08978 reference isoform	180			5	A0A4X1SE54

Protein Sequence

Download: Fasta

MAAANLRAEL DSLLLQLLGD LEELETKRAA LNARVEEGWL SLSKARYAMG AKSVGPLQYA    60
SRMEPQVCVC TSEAQDGLQK FWLVRAGART PEEVGPRESA LRKRKGPTKT AEPEPSPAPQ   120
DPLNWFGILV PHSLRQAQAS FREGLQLAAD MASLQIRIDW GRNQLRGLQE KLKQLEPGAA   180

cDNA Sequence

Download: Fasta

ATGGCGGCAG CGAACCTTCG AGCGGAGCTG GATTCGCTGC TCCTGCAGCT GCTCGGGGAC    60
CTGGAGGAAC TGGAGACCAA GCGCGCGGCG CTGAACGCCC GGGTGGAAGA GGGCTGGCTC   120
TCGCTTTCCA AAGCTCGCTA CGCTATGGGT GCCAAGTCGG TAGGGCCCTT GCAGTATGCC   180
TCCCGCATGG AGCCGCAGGT CTGCGTCTGC ACCAGCGAGG CCCAGGATGG ACTCCAGAAG   240
TTCTGGTTGG TGAGAGCCGG CGCCAGGACT CCAGAGGAGG TGGGGCCTCG CGAGTCAGCT   300
CTGCGTAAGC GCAAGGGTCC CACCAAGACG GCAGAGCCAG AACCTTCCCC AGCTCCCCAG   360
GACCCTCTGA ACTGGTTTGG AATCCTTGTT CCTCACAGTC TGCGGCAGGC TCAAGCCAGC   420
TTCCGGGAGG GTCTGCAGCT GGCTGCAGAC ATGGCCAGCC TTCAGATTCG AATCGACTGG   480
GGTCGAAACC AGCTACGGGG GCTCCAGGAG AAACTCAAGC AGCTGGAGCC TGGGGCTGCC   540
TGA                                                                 543