Sequences for PANTR06375

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PANTR06375 (LYSC_PANTR)

E Pan troglodytes | Lysozyme C [LYZ]

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Orthologs 348

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 106
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	PANTR06374	137			3	A0A2I3TTG7
	PANTR06375 reference isoform	148			4	LYSC_PANTR

Protein Sequence

Download: Fasta

MKALIVLGLV LLSVTVQGKV FERCELARTL KRLGMDGYRG ISLANWMCLA KWESGYNTRA    60
TNYNAGDRST DYGIFQINSR YWCNDGKTPG AVNACHLSCS ALLQDNIADA VACAKRVVRD   120
PQGIRAWVAW RNRCQNRDVR QYVQGCGV                                      148

cDNA Sequence

Download: Fasta

ATGAAGGCTC TCATTGTTCT GGGGCTTGTC CTCCTTTCTG TTACCGTCCA GGGCAAGGTC    60
TTTGAAAGGT GTGAGTTGGC CAGAACTCTG AAAAGATTGG GAATGGATGG CTACAGGGGA   120
ATCAGCCTAG CAAACTGGAT GTGTTTGGCC AAATGGGAGA GTGGTTATAA CACACGAGCT   180
ACAAACTACA ATGCTGGAGA CAGAAGCACT GATTATGGGA TATTTCAGAT CAATAGCCGC   240
TACTGGTGTA ATGATGGCAA AACCCCAGGA GCAGTTAATG CCTGTCATTT ATCCTGCAGT   300
GCTTTGCTGC AAGATAACAT CGCTGATGCT GTAGCTTGTG CAAAGAGGGT TGTCCGTGAT   360
CCACAAGGCA TTAGAGCATG GGTGGCATGG AGAAATCGTT GTCAAAACAG AGATGTCCGT   420
CAGTATGTTC AAGGTTGTGG AGTATAA                                       447