Sequences for OTOGA17193

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene OTOGA17193 (H0X988)

E Otolemur garnettii | Mannose-binding protein C [MBL2]

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Orthologs 141

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 58
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	OTOGA17193 reference isoform	250			5	H0X988

Protein Sequence

Download: Fasta

MSLFPSLPLL LLSVVAASSA ETGTCEDVRK TCPVLACGSP GINGFPGKDG RDGAKGEKGE    60
PGQGIRGLQG PPGKVGPPGL AGSPGLRGVP GLKGDPGTCP DCNSDLDASE REALKSELDR   120
IKKSWSWADF SLGRKVGNKI FLTNGDKLTF DGVKTLCAQF QASVATPRNA EENTAIHNLA   180
KEEAFLGITN ERTEGQFVDL TGSTLTYTNW NEGEPNNAGS EEHCTVLLKN GRWNDIKCSS   240
SFLAVCEFPA                                                          250

cDNA Sequence

Download: Fasta

ATGTCGCTGT TTCCATCGCT CCCTCTCCTT CTCCTGAGCG TGGTGGCAGC ATCTTCTGCA    60
GAAACTGGAA CCTGTGAGGA CGTCCGAAAG ACCTGCCCTG TGCTGGCCTG TGGTTCTCCA   120
GGCATCAACG GCTTCCCAGG CAAAGACGGG CGTGATGGCG CCAAGGGGGA AAAGGGAGAA   180
CCAGGCCAAG GGATCAGAGG CTTGCAGGGC CCTCCTGGAA AGGTGGGGCC TCCAGGACTC   240
GCAGGGTCCC CTGGGTTACG AGGAGTACCA GGTCTTAAAG GAGACCCTGG GACATGTCCA   300
GATTGTAATA GTGACCTGGA TGCTTCAGAA AGAGAAGCTC TGAAATCAGA ACTGGATCGT   360
ATCAAAAAGT CCTGGTCCTG GGCTGACTTC TCTCTGGGCA GAAAAGTTGG GAATAAGATC   420
TTCTTGACCA ATGGTGACAA GCTAACCTTT GATGGAGTGA AGACTCTGTG TGCCCAATTC   480
CAGGCCTCTG TGGCCACTCC CAGAAATGCG GAAGAAAACA CGGCCATCCA TAATCTAGCC   540
AAAGAAGAGG CCTTCCTGGG CATTACAAAT GAGAGGACGG AAGGCCAGTT TGTAGATCTG   600
ACGGGAAGTA CACTCACCTA CACTAACTGG AATGAGGGGG AGCCAAATAA TGCTGGCTCG   660
GAAGAACACT GCACAGTGCT CCTGAAAAAC GGCCGGTGGA ATGATATTAA GTGTAGCTCC   720
TCCTTTTTGG CAGTCTGCGA GTTCCCTGCC TGA                                753