Sequences for ORYLA16247

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ORYLA16247 (ENSORLG00000000218)

E Oryzias latipes

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Orthologs 800

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 7
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	ORYLA16247 reference isoform	212			6	ENSORLG00000000218

Protein Sequence

Download: Fasta

MSQENIFLFV PNLIGYARVL LALLSFFLMP IWPWPAIFFY LLSGLLDAFD GHAARALNQS    60
TKFGAMLDML TDRCATMCLL VNLSLLYPAY AFLFQLSMCL DVASHWLHLH SSTIKGSASH   120
KSIDLSGNPV LRIYYTSKPV LFVMCAGNEL FFCLLYLLHH IQEPAGWLLW LQGLCGLICL   180
LKSAISVLHL VTASQNMAAL DAAEREKAAK QQ                                 212

cDNA Sequence

Download: Fasta

ATGTCGCAGG AAAATATTTT CCTTTTTGTT CCGAATTTAA TCGGTTACGC CCGCGTGCTG    60
CTGGCGCTGC TCTCCTTCTT CCTGATGCCC ATCTGGCCGT GGCCCGCCAT CTTCTTCTAC   120
CTGCTCAGCG GCCTCCTGGA CGCCTTCGAC GGCCACGCGG CGCGGGCGCT GAACCAGTCC   180
ACCAAGTTTG GAGCCATGCT GGACATGCTG ACGGACCGCT GCGCCACCAT GTGTCTGCTG   240
GTCAACCTGT CGCTGCTCTA CCCCGCCTAC GCCTTCCTGT TCCAGCTCAG CATGTGTCTG   300
GACGTCGCCA GCCACTGGCT GCACCTGCAC AGCTCCACCA TCAAAGGCTC GGCGAGCCAT   360
AAGAGCATCG ACCTGTCGGG GAACCCCGTC CTGCGGATCT ACTACACCTC CAAGCCCGTT   420
CTGTTCGTGA TGTGCGCCGG GAACGAGCTC TTCTTCTGCC TGCTCTACCT TCTTCATCAC   480
ATCCAGGAGC CTGCTGGCTG GCTCCTGTGG CTGCAGGGGC TCTGCGGCCT CATCTGCCTG   540
CTCAAGTCCG CCATCAGCGT CCTGCACCTG GTCACCGCCT CCCAGAACAT GGCCGCCCTG   600
GACGCCGCCG AGCGCGAGAA GGCGGCCAAG CAGCAGTGA                          639