Sequences for MOUSE63351

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE63351 (APOA1_MOUSE)

E Mus musculus | Apolipoprotein A-I [Apoa1]

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Orthologs 130

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE63352	122			3	A0A1L1STX7
	MOUSE63351 reference isoform	264			3	APOA1_MOUSE

Protein Sequence

Download: Fasta

MKAVVLAVAL VFLTGSQAWH VWQQDEPQSQ WDKVKDFANV YVDAVKDSGR DYVSQFESSS    60
LGQQLNLNLL ENWDTLGSTV SQLQERLGPL TRDFWDNLEK ETDWVRQEMN KDLEEVKQKV   120
QPYLDEFQKK WKEDVELYRQ KVAPLGAELQ ESARQKLQEL QGRLSPVAEE FRDRMRTHVD   180
SLRTQLAPHS EQMRESLAQR LAELKSNPTL NEYHTRAKTH LKTLGEKARP ALEDLRHSLM   240
PMLETLKTQV QSVIDKASET LTAQ                                          264

cDNA Sequence

Download: Fasta

ATGAAAGCTG TGGTGCTGGC CGTGGCTCTG GTCTTCCTGA CAGGGAGCCA GGCTTGGCAC    60
GTATGGCAGC AAGATGAACC CCAGTCCCAA TGGGACAAAG TGAAGGATTT CGCTAATGTG   120
TATGTGGATG CGGTCAAAGA CAGCGGCAGA GACTATGTGT CCCAGTTTGA ATCCTCCTCC   180
TTGGGCCAAC AGCTGAACCT GAATCTCCTG GAAAACTGGG ACACTCTGGG TTCAACCGTT   240
AGTCAGCTGC AGGAACGGCT GGGCCCATTG ACTCGGGACT TCTGGGATAA CCTGGAGAAA   300
GAAACAGATT GGGTGAGACA GGAGATGAAC AAGGACCTAG AGGAAGTGAA ACAGAAGGTG   360
CAGCCCTACC TGGACGAATT CCAGAAGAAA TGGAAAGAGG ATGTGGAGCT CTACCGCCAG   420
AAGGTGGCGC CTCTGGGCGC CGAGCTGCAG GAGAGCGCGC GCCAGAAGCT GCAGGAGCTG   480
CAAGGGAGAC TGTCCCCTGT GGCTGAGGAA TTTCGCGACC GCATGCGCAC ACACGTAGAC   540
TCTCTGCGCA CACAGCTAGC GCCCCACAGC GAACAGATGC GCGAGAGCCT GGCCCAGCGC   600
CTGGCTGAGC TCAAGAGCAA CCCTACCTTG AACGAGTACC ACACCAGGGC CAAAACCCAC   660
CTGAAGACAC TTGGCGAGAA AGCCAGACCT GCGCTGGAGG ACCTGCGCCA TAGTCTGATG   720
CCCATGCTGG AGACGCTTAA GACCCAAGTC CAGAGTGTGA TCGACAAGGC CAGCGAGACT   780
CTGACTGCCC AGTGA                                                    795