Sequences for MOUSE52368

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE52368 (TAF10_MOUSE)

E Mus musculus | Transcription initiation factor TFIID subunit 10 [Taf10]

‹

Orthologs 164

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 22
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE52368 reference isoform	218			5	TAF10_MOUSE

Protein Sequence

Download: Fasta

MSCSGSGADP EAATACAASV AGPAPLVSAP AALPTSTAAE SKASPAGTAG GPVAGVATAG    60
TGPVAARAGE PAERRGPASV AAGGAAPPEG AMSNGVYALP SAANGEVKPV VSSTPLVDFL   120
MQLEDYTPTI PDAVTGYYLN RAGFEASDPR IIRLISLAAQ KFISDIANDA LQHCKMKGTA   180
SGSSRSKSKD RKYTLTMEDL TPALSEYGIN VKKPHYFT                           218

cDNA Sequence

Download: Fasta

ATGAGCTGCA GCGGCTCCGG CGCGGACCCC GAGGCGGCGA CCGCCTGTGC CGCCTCGGTC    60
GCGGGTCCGG CACCCCTGGT GTCGGCTCCC GCTGCGCTGC CCACTAGCAC GGCCGCGGAG   120
AGCAAGGCCA GCCCCGCGGG GACAGCAGGG GGCCCCGTGG CTGGAGTCGC CACTGCGGGC   180
ACGGGCCCCG TGGCGGCACG GGCAGGGGAG CCGGCAGAGC GGCGCGGGCC AGCTTCGGTG   240
GCAGCGGGCG GCGCGGCTCC CCCGGAGGGG GCAATGTCTA ACGGGGTTTA CGCCCTACCG   300
AGCGCGGCCA ACGGAGAAGT GAAGCCCGTA GTGTCCAGCA CACCTCTAGT GGACTTCTTG   360
ATGCAGTTGG AGGATTACAC ACCTACGATC CCAGATGCAG TGACTGGTTA CTACCTGAAC   420
CGCGCTGGCT TTGAAGCTTC AGACCCACGC ATAATTCGGC TCATCTCACT AGCTGCCCAG   480
AAATTCATCT CAGATATTGC CAATGATGCC CTACAGCACT GCAAAATGAA GGGCACAGCC   540
TCTGGCAGCT CCCGGAGCAA GAGCAAGGAT CGCAAGTACA CCCTAACCAT GGAGGACTTG   600
ACCCCTGCCC TCAGCGAGTA TGGCATCAAT GTGAAGAAGC CGCACTACTT CACCTGA      657