Sequences for MOUSE50827

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE50827 (BID_MOUSE)

E Mus musculus | BH3-interacting domain death agonist [Bid]

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Orthologs 111

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 3
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE50826 reference isoform	195			5	BID_MOUSE
	MOUSE50828	52			2	D3Z463
	MOUSE50827	195			5	BID_MOUSE

Protein Sequence

Download: Fasta

MDSEVSNGSG LGAEHITDLL VFGFLQSSGC TRQELEVLGR ELPVQAYWEA DLEDELQTDG    60
SQASRSFNQG RIEPDSESQE EIIHNIARHL AQIGDEMDHN IQPTLVRQLA AQFMNGSLSE   120
EDKRNCLAKA LDEVKTAFPR DMENDKAMLI MTMLLAKKVA SHAPSLLRDV FHTTVNFINQ   180
NLFSYVRNLV RNEMD                                                    195

cDNA Sequence

Download: Fasta

ATGGACTCTG AGGTCAGCAA CGGTTCCGGC CTGGGGGCCG AGCACATCAC AGACCTGCTG    60
GTGTTCGGCT TTCTCCAAAG CTCTGGCTGT ACTCGCCAAG AGCTGGAGGT GCTGGGTCGG   120
GAACTGCCTG TGCAAGCTTA CTGGGAGGCA GACCTCGAAG ACGAGCTGCA GACAGATGGC   180
AGCCAGGCCA GCCGCTCCTT CAACCAAGGA AGAATAGAGC CAGATTCTGA AAGTCAGGAA   240
GAAATCATCC ACAACATTGC CAGACATCTC GCCCAAATAG GCGATGAGAT GGACCACAAC   300
ATCCAGCCCA CACTGGTGAG ACAGCTAGCC GCACAGTTCA TGAATGGCAG CCTGTCGGAG   360
GAAGACAAAA GGAACTGCCT GGCCAAAGCC CTTGATGAGG TGAAGACAGC CTTCCCCAGA   420
GACATGGAGA ACGACAAGGC CATGCTGATA ATGACCATGC TGTTGGCCAA AAAAGTGGCC   480
AGTCACGCAC CATCTTTGCT CCGTGATGTC TTCCACACGA CTGTCAACTT TATTAACCAG   540
AACCTATTCT CCTATGTGAG GAACTTGGTT AGAAACGAGA TGGACTGA                588