Sequences for MOUSE49282

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE49282 (PROK2_MOUSE)

E Mus musculus | Prokineticin-2 [Prok2]

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Orthologs 135

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 4
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE49279	107			3	PROK2_MOUSE
	MOUSE49280 reference isoform	128			4	PROK2_MOUSE
	MOUSE49281	65			2	G3X8R6
	MOUSE49282	86			2	PROK2_MOUSE

Protein Sequence

Download: Fasta

MGDPRCAPLL LLLLLPLLFT PPAGDAAVIT GACDKDSQCG GGMCCAVSIW VKSIRICTPM    60
GQVGDSCHPL TRKSHVANGR QERRRAKRRK RKKEVPFWGR RMHHTCPCLP GLACLRTSFN   120
RFICLARK                                                            128

cDNA Sequence

Download: Fasta

ATGGGGGACC CGCGCTGTGC CCCGCTACTG CTACTTCTGC TGCTACCGCT GCTGTTCACA    60
CCGCCCGCCG GGGATGCCGC GGTCATCACC GGGGCTTGCG ACAAGGACTC TCAGTGCGGA   120
GGAGGCATGT GCTGTGCTGT CAGTATCTGG GTTAAGAGCA TAAGGATCTG CACACCTATG   180
GGCCAAGTGG GCGACAGCTG CCACCCCCTG ACTCGGAAAA GTCATGTTGC AAATGGAAGG   240
CAGGAAAGAA GAAGGGCGAA GAGAAGAAAG AGGAAGAAGG AGGTTCCATT TTGGGGGCGG   300
AGGATGCACC ACACCTGCCC CTGCCTGCCA GGCTTGGCGT GTTTAAGGAC TTCTTTCAAC   360
CGGTTTATTT GCTTGGCCCG GAAATGA                                       387