Sequences for MOUSE48630

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE48630 (RM19_MOUSE)

E Mus musculus | Large ribosomal subunit protein bL19m [Mrpl19]

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Orthologs 270

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE48630 reference isoform	292			5	RM19_MOUSE

Protein Sequence

Download: Fasta

MAASMAESCR ASLYLARSVR MARPRLAAFA SDACRVCTGP SRFQSTGPSE PGGFKPPPKP    60
VIVDRRRVPE DERRFLSPEF IPPRGRTNPL KFKIERKDML DRRKVLPIPE FYVGSILRVT   120
TADPYASGKT SQFLGICIKR SGNGLGATFT LRNTIEGQGV EICFELYNPR IQEIQVVKLE   180
KRLDDNLLYL RDALPEYSTF DVNMKPVPQE ACQEVPVNKL KVKMKPKPWS KRWERPNFNI   240
KGIRFDLALT EEQMKEAQKW NKPWIEFDMM REYDTSKIEA ALWEEIEASK KS           292

cDNA Sequence

Download: Fasta

ATGGCGGCCT CCATGGCAGA AAGTTGTAGG GCGTCCCTGT ACCTGGCCCG GAGCGTCCGA    60
ATGGCCAGGC CACGGCTTGC TGCCTTCGCA TCTGATGCCT GCCGTGTCTG CACGGGCCCA   120
AGCCGATTTC AGAGCACCGG GCCTTCAGAG CCCGGTGGGT TCAAGCCACC GCCGAAACCT   180
GTCATCGTGG ACCGGCGCCG AGTCCCGGAA GACGAGAGAA GGTTCCTGAG TCCTGAATTC   240
ATCCCTCCCA GGGGGAGAAC AAACCCTCTG AAATTTAAGA TAGAAAGAAA AGATATGCTA   300
GACAGGAGAA AGGTGCTTCC GATTCCAGAG TTCTATGTTG GAAGCATACT TCGAGTCACC   360
ACAGCCGACC CCTATGCCAG TGGAAAAACC AGCCAGTTCC TGGGGATTTG CATCAAGCGA   420
TCAGGGAATG GGCTCGGGGC TACTTTCACC CTCAGGAACA CGATTGAAGG ACAAGGTGTG   480
GAGATTTGCT TTGAACTGTA TAATCCTCGA ATCCAGGAGA TCCAGGTGGT GAAGTTGGAG   540
AAGCGGCTGG ATGACAACCT GCTGTACTTA CGGGACGCCC TTCCCGAGTA CAGCACCTTT   600
GACGTGAACA TGAAGCCGGT CCCACAGGAG GCCTGCCAGG AAGTGCCTGT TAACAAGCTG   660
AAAGTTAAAA TGAAGCCAAA GCCGTGGTCC AAACGCTGGG AACGTCCAAA CTTCAACATT   720
AAGGGAATCA GATTTGACCT TGCTTTAACT GAAGAGCAAA TGAAGGAAGC CCAGAAGTGG   780
AACAAGCCAT GGATTGAGTT TGATATGATG AGAGAATATG ACACTTCAAA AATTGAAGCT   840
GCATTGTGGG AAGAAATAGA AGCATCGAAG AAGTCTTGA                          879