Sequences for MOUSE47440

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE47440 (Q91Z34)

E Mus musculus | RAB43, member RAS oncogene family [Rab43]

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Orthologs 9306

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 12748
Gene information
GO Annotations
Sequences/Isoforms 3
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE47438 reference isoform	210			3	RAB43_MOUSE
	MOUSE47439	150			2	D3Z444
	MOUSE47440	156			3	Q91Z34

Protein Sequence

Download: Fasta

MAGPGPGDQD EHYDFLFKLV LVGDASVGKT CVVQRFKTGA FSARQGSTIG VDFTMKTLEI    60
QGKRVKLQIW DTAGQERFRT ITQSYYRSAN GAILAYDISK RSTFLSVPHW IEDVRKYAGS   120
NIVQLLIGNK SDLADFREVP LAEAQSLAEH YDILCAIETS AKDSSNVEEA FTRVATELIM   180
RHGGPMFSEK NTDHIQLDSK DIAESWGCGC                                    210

cDNA Sequence

Download: Fasta

ATGGCGGGCC CTGGCCCGGG AGATCAGGAC GAACACTACG ATTTCCTGTT CAAGCTGGTG    60
TTAGTGGGCG ACGCGAGCGT GGGCAAGACG TGCGTGGTGC AGCGCTTCAA GACCGGCGCC   120
TTCTCGGCGC GTCAGGGCAG CACCATCGGT GTCGACTTCA CCATGAAGAC GCTGGAGATC   180
CAGGGCAAGC GGGTCAAGTT ACAGATTTGG GACACAGCTG GCCAGGAGCG GTTCCGGACC   240
ATCACCCAGA GCTACTACCG AAGTGCCAAT GGGGCTATCC TTGCGTACGA CATCAGCAAG   300
AGGAGCACCT TCTTGTCAGT GCCTCACTGG ATCGAGGATG TGAGGAAGTA CGCGGGTTCC   360
AACATCGTGC AGCTGCTGAT TGGGAACAAG TCAGACCTTG CCGATTTCCG GGAGGTCCCA   420
TTGGCGGAGG CACAGAGCCT GGCTGAGCAC TATGACATCC TCTGTGCCAT CGAGACCTCC   480
GCAAAGGACT CCAGCAATGT GGAGGAGGCC TTCACCAGAG TGGCCACGGA GCTCATCATG   540
AGGCACGGAG GTCCCATGTT CAGTGAGAAG AACACAGACC ACATCCAGCT GGACAGCAAG   600
GACATTGCGG AGAGCTGGGG CTGTGGGTGC TGA                                633