Sequences for MOUSE42449

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE42449 (Q3TWH3)

E Mus musculus | Proline-rich nuclear receptor coactivator 1 [Pnrc1]

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Orthologs 93

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE42449 reference isoform	297			2	Q3TWH3

Protein Sequence

Download: Fasta

MTVVSVPQRD LALSGRLAPL GFLGALPMVN PAPPPLPRLP DPRALPPTLF LPHFLGGDGP    60
CLAPAPRTTA PSGCTLAPAA APRAAPKKRR KKKVRASPAG QLPSRFHQFQ QHRPSLEGGR   120
SPAPGPIVAQ EERGLAATAL LHRQPPLAKE VLKSKMGKSE KIALPHSQLV HGIHLCEQPK   180
INRQKSKYNL PLTKITSAKR NESDFWQDSA SSDRMQKQEK KSFKNTENIK SNHLKKSAFL   240
TEVSQKENYA GAKFSDPPSP SVLPKPPSHW MGSTAENPSQ SRELMAVHLK TLLKVQT      297

cDNA Sequence

Download: Fasta

ATGACCGTCG TCTCCGTCCC ACAGCGAGAT CTCGCTCTGA GCGGCCGCTT AGCGCCGCTC    60
GGGTTCCTCG GGGCCCTCCC GATGGTGAAC CCGGCCCCGC CGCCCTTGCC GCGCCTTCCG   120
GACCCGCGCG CGCTGCCACC CACCCTCTTC CTGCCGCACT TCCTCGGGGG GGACGGGCCG   180
TGCCTGGCGC CCGCGCCTCG CACCACCGCG CCGTCCGGCT GCACCTTGGC CCCGGCGGCT   240
GCCCCGCGGG CGGCGCCCAA GAAGCGGCGG AAGAAAAAGG TGCGGGCCAG CCCGGCCGGG   300
CAGCTGCCCA GCCGCTTCCA CCAGTTCCAG CAGCACCGGC CGAGCCTGGA GGGTGGTCGC   360
AGCCCGGCGC CGGGGCCAAT CGTCGCGCAG GAGGAGCGAG GTCTGGCGGC CACTGCCCTG   420
CTCCACAGAC AGCCCCCACT CGCGAAGGAG GTTTTAAAAT CAAAGATGGG AAAATCGGAG   480
AAAATTGCCC TTCCCCACAG CCAGCTTGTG CATGGTATAC ACTTGTGTGA ACAACCAAAG   540
ATAAACAGAC AGAAAAGCAA ATACAACTTG CCACTAACCA AGATCACCTC TGCAAAAAGG   600
AATGAAAGTG ACTTTTGGCA GGATTCTGCT TCCTCCGATC GAATGCAGAA GCAGGAAAAA   660
AAGTCTTTTA AAAATACTGA GAACATTAAA AGTAACCATT TGAAGAAATC AGCATTTCTA   720
ACAGAAGTGA GCCAAAAGGA AAATTACGCC GGAGCAAAGT TCAGTGACCC ACCTTCCCCT   780
AGTGTCCTCC CAAAGCCTCC GAGTCACTGG ATGGGAAGTA CCGCCGAGAA CCCCAGCCAG   840
AGCCGGGAGC TGATGGCAGT GCACTTGAAA ACGCTCCTCA AGGTGCAGAC CTAG         894