Sequences for MOUSE40336

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE40336 (RFA2_MOUSE)

E Mus musculus [Rpa2]

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Orthologs 803

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 51
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE40337	70			3	F6V8R7
	MOUSE40336 reference isoform	270			9	RFA2_MOUSE

Protein Sequence

Download: Fasta

MWNSGFESFS SSTYGGAGGY TQSPGGFGSP TPSQAEKKSR VRAQHIVPCT ISQLLSATLT    60
DEVFRIGDVE ISQVTIVGII RHAEKAPTNI VYKIDDMTAP PMDVRQWVDT DDASGENAVV   120
PPETYVKVAG HLRSFQNKKS LVAFKIIPLE DMNEFTAHIL EVVNSHMMLS KPNSQASAGR   180
PSMSNPGMSE PGNFSGNNFM PANGLTVVQN QVLNLIKACP RPEGLNFQDL RSQLQHMPVP   240
SIKQAVDFLC NEGHIYSTVD DDHFKSTDAE                                    270

cDNA Sequence

Download: Fasta

ATGTGGAATA GCGGATTCGA AAGCTTCAGC AGCTCCACCT ATGGCGGAGC AGGCGGCTAC    60
ACGCAGTCCC CCGGTGGCTT CGGGTCGCCC ACACCGTCGC AGGCGGAGAA GAAATCGAGA   120
GTCCGAGCCC AGCATATTGT GCCCTGTACC ATATCCCAGC TGCTTTCTGC TACTCTGACT   180
GATGAAGTGT TCAGAATTGG AGATGTCGAG ATTTCACAGG TCACTATTGT GGGGATAATC   240
AGACATGCGG AGAAGGCTCC AACCAACATT GTTTACAAGA TAGACGATAT GACAGCTCCG   300
CCCATGGATG TTCGTCAGTG GGTTGACACG GATGATGCCA GTGGTGAGAA CGCCGTGGTT   360
CCTCCCGAAA CATACGTGAA AGTCGCTGGT CACCTCAGGT CTTTCCAGAA CAAAAAGAGC   420
TTGGTGGCCT TTAAGATCAT TCCTCTGGAA GACATGAATG AGTTCACCGC ACACATCCTG   480
GAAGTGGTCA ATTCACACAT GATGCTCAGC AAGCCCAACA GCCAGGCCTC TGCAGGGAGA   540
CCATCGATGA GCAACCCAGG AATGAGTGAG CCGGGGAACT TCAGCGGGAA TAACTTCATG   600
CCAGCAAATG GCCTCACTGT GGTCCAAAAC CAGGTGCTGA ATTTGATCAA GGCTTGCCCA   660
AGACCTGAAG GCCTGAACTT CCAGGACCTC AGGAGCCAGC TCCAGCATAT GCCTGTTCCC   720
TCAATCAAGC AAGCAGTGGA TTTTCTGTGC AACGAGGGCC ACATTTACTC TACTGTGGAC   780
GACGATCACT TTAAGTCTAC AGATGCAGAG TGA                                813