Sequences for MOUSE23697

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE23697 (UB2D2_MOUSE)

E Mus musculus | Ubiquitin-conjugating enzyme E2 D2 [Ube2d2]

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Orthologs 5456

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 2605
Gene information
GO Annotations
Sequences/Isoforms 5
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE23698	50			3	A0A494BBD7
	MOUSE23699	92			4	A0A494BAN1
	MOUSE23700	93			4	A0A494BA56
	MOUSE23701	147			7	UB2D2_MOUSE
	MOUSE23697 reference isoform	147			7	UB2D2_MOUSE

Protein Sequence

Download: Fasta

MALKRIHKEL NDLARDPPAQ CSAGPVGDDM FHWQATIMGP NDSPYQGGVF FLTIHFPTDY    60
PFKPPKVAFT TRIYHPNINS NGSICLDILR SQWSPALTIS KVLLSICSLL CDPNPDDPLV   120
PEIARIYKTD REKYNRIARE WTQKYAM                                       147

cDNA Sequence

Download: Fasta

ATGGCTCTGA AGAGAATCCA CAAGGAATTG AATGACCTGG CTCGAGATCC CCCAGCACAG    60
TGTTCAGCAG GTCCTGTTGG AGATGATATG TTTCATTGGC AGGCTACAAT AATGGGGCCA   120
AATGACAGCC CCTATCAGGG TGGAGTATTT TTCTTGACAA TTCATTTCCC AACAGATTAC   180
CCCTTCAAAC CGCCTAAGGT TGCATTTACA ACAAGAATTT ATCACCCAAA TATTAACAGT   240
AATGGCAGCA TTTGTCTTGA TATTCTACGG TCACAGTGGT CTCCAGCACT AACTATTTCA   300
AAAGTACTTT TGTCCATCTG TTCTCTGTTG TGTGATCCCA ATCCAGATGA TCCTTTAGTG   360
CCTGAGATTG CTCGGATCTA CAAAACAGAT AGAGAAAAGT ACAACAGAAT AGCTCGGGAA   420
TGGACTCAGA AGTATGCGAT GTAA                                          444