Sequences for MOUSE22074

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE22074 (Q8R296)

E Mus musculus | Vomeronasal type-1 receptor [Vmn1r237]

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Orthologs 187

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 14
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE22073 reference isoform	289			1	Q8R296
	MOUSE22074	289			1	Q8R296

Protein Sequence

Download: Fasta

MENSDIVISV IFLSQTVVGI LGNSFLVYHY LMLYYMRCRL KFTDWILQHL IVANFLTLLC    60
KGIPHTVSAF GLKNFLDDIG CKLTFYLHRI GRGVSISSTC FLSVFQAITI SPSASRWTQL   120
KAKSPSYIAS CVYMSWALSF LVNIAFPMDM RARQNNRNIT RLRVYGICST VHHNKVSDII   180
NAVLLSIPDV VFMVLMVWSS GYMVCILYRH KQRMKHIHRS TFSFRSSAEF RATKTILLLV   240
STFVFFYTIS CLFQINLALF HNPTSLWVNM ASVVTACFPT VSPFLVISS               289

cDNA Sequence

Download: Fasta

ATGGAAAACA GTGACATTGT AATTAGTGTG ATCTTCTTAT CACAGACTGT AGTTGGGATC    60
CTGGGCAACT CCTTCTTAGT CTACCATTAT CTGATGCTTT ACTACATGAG GTGCAGACTA   120
AAGTTCACAG ACTGGATTCT GCAGCACTTG ATTGTAGCCA ACTTCTTAAC TCTACTGTGT   180
AAAGGAATCC CCCATACTGT GTCTGCCTTT GGGTTGAAAA ACTTCCTCGA TGACATTGGT   240
TGTAAACTGA CCTTCTATCT TCACAGAATA GGGAGGGGTG TTTCCATCAG CAGCACCTGC   300
TTTCTGAGTG TCTTCCAGGC CATCACCATC AGTCCAAGTG CTTCCAGGTG GACACAGCTT   360
AAAGCCAAGT CTCCCAGTTA CATTGCTTCC TGTGTGTACA TGAGTTGGGC CCTGTCATTC   420
TTAGTAAATA TAGCTTTTCC CATGGACATG AGAGCAAGAC AAAACAATAG GAACATTACA   480
CGCCTAAGGG TGTATGGTAT CTGTTCTACT GTTCATCATA ACAAGGTCAG TGACATTATC   540
AATGCAGTAT TACTCTCTAT TCCTGATGTG GTGTTCATGG TGCTGATGGT TTGGTCCAGT   600
GGCTACATGG TTTGTATTCT TTACAGACAT AAGCAGAGGA TGAAGCACAT TCATAGGAGT   660
ACCTTTTCAT TCAGGTCCTC TGCTGAGTTT AGAGCCACAA AGACCATTCT GCTCTTGGTG   720
AGCACCTTTG TCTTTTTTTA CACAATTTCT TGCCTCTTCC AAATTAATTT GGCTCTTTTC   780
CATAACCCAA CCTCATTATG GGTGAACATG GCTTCAGTAG TTACTGCATG TTTCCCAACT   840
GTGAGTCCCT TTCTGGTGAT CTCCAGTTAA                                    870