Sequences for MOUSE19717

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE19717 (A9Q7H1)

E Mus musculus | RIKEN cDNA 9830107B12 gene [9830107B12Rik]

‹

Orthologs 15

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 32
Gene information
GO Annotations
Sequences/Isoforms 3
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE19716	160			3	D3Z5D6
	MOUSE19718	149			4	A0A3B2W4G3
	MOUSE19717 reference isoform	198			4	A9Q7H1

Protein Sequence

Download: Fasta

MAWEPTYLLS PVLLLLLASG SWTQNPELLR VLEGKTVSVT CMYDPLYNSD EKIWCKQIDN    60
LCYPLVSKGA EKPRFSILQS SKFNFFTVTM SKLRMSDSGI YHCGIAANTR ITYLRGIQLV   120
VSKDDSSAPA NGTFPTLRAH TFRTTQDPIS IAARGSVSSV TIPVVCGLLS KTLVFTVLFI   180
VTQKSFGRQA MKAHNSNS                                                 198

cDNA Sequence

Download: Fasta

ATGGCCTGGG AGCCCACATA CCTGCTCTCC CCAGTGCTGC TGCTGCTCCT GGCCTCAGGC    60
TCCTGGACAC AGAACCCAGA GTTACTTCGA GTACTGGAGG GCAAGACTGT TTCTGTGACA   120
TGCATGTATG ATCCACTCTA CAACTCTGAT GAGAAGATCT GGTGTAAGCA AATAGACAAC   180
TTGTGTTACC CCTTGGTCAG CAAAGGTGCC GAGAAGCCAA GATTCTCCAT CCTACAGTCT   240
TCTAAGTTCA ACTTCTTCAC TGTCACCATG AGTAAGCTCA GGATGAGTGA CTCGGGCATC   300
TATCACTGTG GGATCGCTGC AAATACCAGG ATAACTTATC TCAGAGGTAT CCAACTGGTG   360
GTGTCAAAAG ATGATTCAAG TGCTCCTGCC AATGGGACAT TTCCAACTCT GAGAGCTCAC   420
ACTTTTAGGA CCACACAGGA CCCGATCTCC ATTGCTGCCA GGGGCTCTGT ATCCAGTGTT   480
ACTATTCCCG TGGTCTGTGG ACTCCTCAGC AAGACACTGG TATTCACGGT CTTATTCATT   540
GTCACACAGA AGTCATTTGG ACGACAGGCC ATGAAGGCAC ACAACAGTAA CTCCTGA      597