Sequences for MOUSE17106

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Category	Prefixes
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HOGs	hog, sequence
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE17106 (F8WHN2)

E Mus musculus | Chromobox 7 [Cbx7]

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Orthologs 143

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1
Gene information
GO Annotations
Sequences/Isoforms 7
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE17105	158			6	CBX7_MOUSE
	MOUSE17107	158			6	CBX7_MOUSE
	MOUSE17108	180			6	D3YY71
	MOUSE17109	106			4	D3YYK4
	MOUSE17110	61			4	D3YY71
	MOUSE17111	121			4	H3BK45
	MOUSE17106 reference isoform	251			6	F8WHN2

Protein Sequence

Download: Fasta

MELSAIGEQV FAVESIRKKR VRKGKVEYLV KWKGWPPKYS TWEPEEHILD PRLVMAYEEK    60
EERDRASGYR KRGPKPRRLL LQRLYSMDLR SSHKAKGNEK LCFSLARPLR SGSPMGVVKA   120
GVAELVEKGP LVPTLPFPLR KARKAHKYLR LSRKKFPPRG PHLESHSHRR ELSLQESAAP   180
DVVQTPGDWE PMEQAPEEEA EADLTNGPPP WTPTLPSSEV TVTDITANSV TVTFREAQAA   240
EGFFRDRNEK L                                                        251

cDNA Sequence

Download: Fasta

ATGGAGCTGT CAGCCATAGG CGAGCAGGTG TTTGCGGTGG AGAGCATCCG GAAGAAGCGC    60
GTGCGGAAGG GCAAAGTTGA ATATCTGGTG AAGTGGAAAG GATGGCCCCC CAAGTATAGC   120
ACCTGGGAGC CAGAGGAGCA CATCTTGGAC CCTCGCCTTG TCATGGCCTA CGAGGAGAAG   180
GAGGAGAGAG ACCGAGCCTC GGGGTATAGG AAGAGAGGTC CGAAACCCAG GCGGCTTCTG   240
CTACAGCGGC TGTACAGCAT GGACCTGCGG AGCTCCCACA AAGCCAAGGG CAATGAGAAG   300
CTCTGCTTCT CTCTGGCGCG CCCGCTCCGC AGCGGGAGCC CCATGGGGGT GGTCAAGGCA   360
GGGGTCGCTG AGCTGGTGGA GAAGGGCCCC TTGGTGCCCA CCCTGCCATT CCCGCTCCGC   420
AAGGCGCGCA AAGCCCACAA GTACCTGCGG CTCTCACGCA AGAAGTTCCC GCCACGCGGG   480
CCCCACCTGG AGAGTCACAG CCATCGACGG GAGCTCTCCC TGCAGGAGTC AGCAGCCCCA   540
GACGTTGTGC AGACCCCCGG AGACTGGGAG CCTATGGAGC AAGCCCCCGA GGAGGAGGCA   600
GAAGCAGACC TGACCAATGG GCCGCCTCCC TGGACACCCA CGCTCCCCTC AAGTGAAGTT   660
ACCGTGACTG ACATCACCGC CAACTCCGTC ACCGTCACCT TCCGCGAGGC TCAAGCCGCC   720
GAGGGCTTCT TCCGAGACCG CAACGAGAAG CTGTGA                             756