Sequences for MOUSE14723

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

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HOGs	hog, sequence
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE14723 (Q920S1)

E Mus musculus | Granzyme N [Gzmn]

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Orthologs 76

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 39
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE14724	213			5	Q76HN3
	MOUSE14723 reference isoform	248			5	Q920S1

Protein Sequence

Download: Fasta

MLPVLILLIF LLPVGDGAEE VIGGHEVKPH SRPYMALVVF LKVNGIGSSC GGFLVQDYFV    60
LTAAHCIGSS MTVTLGAHNL RAQEETQQII PVNKALPHPD YNPLDHTNDI MLLKLESKAK   120
GTRDVRPLKL PGPKDKVNPG DVCSVAGWGK TSINTTEGSA LLEEAELIIQ ENKECKKQFR   180
HYSKITEICA GDPNKIEAPS KGDSGGPLVC NNKAHGVLSY VKSKKISSGV FTKVVHFLPW   240
ISTNMKLL                                                            248

cDNA Sequence

Download: Fasta

ATGCTACCAG TTCTGATTCT CCTGATCTTT CTTCTGCCAG TAGGAGATGG AGCAGAGGAG    60
GTCATCGGGG GCCATGAGGT CAAGCCCCAC TCTCGCCCTT ACATGGCATT AGTTGTGTTT   120
CTGAAAGTTA ATGGGATTGG AAGTTCCTGT GGCGGCTTCC TGGTTCAAGA CTACTTTGTG   180
CTGACGGCTG CTCACTGCAT TGGAAGCTCA ATGACAGTCA CACTGGGGGC CCACAACCTC   240
CGTGCACAGG AGGAGACTCA GCAGATTATT CCTGTGAATA AAGCTCTTCC CCACCCAGAC   300
TATAATCCTC TGGATCACAC CAATGACATC ATGCTATTAA AGCTGGAGAG TAAGGCCAAG   360
GGGACTAGAG ATGTGAGGCC CCTCAAGTTG CCTGGGCCCA AAGACAAGGT GAATCCAGGG   420
GATGTGTGCA GTGTGGCTGG CTGGGGGAAA ACGTCCATCA ATACCACTGA AGGATCTGCT   480
CTCTTAGAAG AGGCTGAATT GATCATCCAG GAGAACAAGG AATGCAAAAA ACAATTCCGT   540
CACTATTCCA AAATCACAGA GATTTGTGCT GGAGACCCAA ACAAAATAGA GGCTCCGTCC   600
AAGGGTGACT CGGGGGGACC CCTCGTGTGT AACAACAAAG CTCATGGAGT TTTGTCTTAT   660
GTGAAATCCA AGAAGATCTC TTCAGGAGTC TTCACTAAGG TTGTGCACTT CCTGCCGTGG   720
ATAAGCACAA ACATGAAGCT GCTCTAA                                       747