Sequences for MOUSE08239

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE08239 (RS7_MOUSE)

E Mus musculus | Small ribosomal subunit protein eS7 [Rps7]

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Orthologs 1042

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 177
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE08238 reference isoform	194			6	RS7_MOUSE
	MOUSE08239	194			6	RS7_MOUSE

Protein Sequence

Download: Fasta

MFSSSAKIVK PNGEKPDEFE SGISQALLEL EMNSDLKAQL RELNITAAKE IEVGGGRKAI    60
IIFVPVPQLK SFQKIQVRLV RELEKKFSGK HVVFIAQRRI LPKPTRKSRT KNKQKRPRSR   120
TLTAVHDAIL EDLVFPSEIV GKRIRVKLDG SRLIKVHLDK AQQNNVEHKV ETFSGVYKKL   180
TGKDVNFEFP EFQL                                                     194

cDNA Sequence

Download: Fasta

ATGTTCAGCT CGAGCGCCAA GATCGTGAAG CCCAATGGCG AGAAGCCGGA CGAGTTCGAG    60
TCTGGCATCT CTCAGGCGCT GCTCGAGCTG GAGATGAACT CCGATCTCAA GGCGCAGCTG   120
CGGGAACTCA ACATCACCGC AGCCAAGGAA ATCGAAGTTG GTGGTGGTCG GAAAGCTATC   180
ATAATTTTTG TACCAGTTCC TCAGCTTAAA TCTTTCCAGA AAATCCAAGT CCGGCTAGTT   240
CGTGAATTGG AGAAAAAGTT CAGTGGCAAG CACGTGGTCT TCATTGCTCA GAGGAGGATT   300
CTGCCCAAGC CAACCCGGAA AAGCCGTACG AAAAATAAGC AGAAGCGCCC CAGAAGCCGT   360
ACCCTGACAG CAGTGCACGA CGCCATCCTT GAGGACTTAG TCTTCCCAAG TGAAATTGTG   420
GGTAAGAGGA TCCGTGTGAA ACTGGATGGC AGCCGGCTCA TAAAAGTTCA CTTAGACAAA   480
GCACAGCAGA ACAACGTGGA ACACAAGGTT GAAACTTTTT CTGGTGTGTA CAAGAAGCTC   540
ACAGGCAAGG ATGTTAATTT TGAATTCCCA GAGTTTCAGT TGTAA                   585