Sequences for MOUSE00025

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE00025 (LYZ2_MOUSE)

E Mus musculus | Lysozyme C-2 [Lyz2]

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Orthologs 460

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 132
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE00025 reference isoform	148			4	LYZ2_MOUSE

Protein Sequence

Download: Fasta

MKTLLTLGLL LLSVTAQAKV YERCEFARTL KRNGMAGYYG VSLADWVCLA QHESNYNTRA    60
TNYNRGDQST DYGIFQINSR YWCNDGKTPR AVNACGINCS ALLQDDITAA IQCAKRVVRD   120
PQGIRAWVAW RAHCQNRDLS QYIRNCGV                                      148

cDNA Sequence

Download: Fasta

ATGAAGACTC TCCTGACTCT GGGACTCCTC CTGCTTTCTG TCACTGCTCA GGCCAAGGTC    60
TATGAACGTT GTGAGTTTGC CAGAACTCTG AAAAGGAATG GAATGGCTGG CTACTATGGA   120
GTCAGCCTGG CCGACTGGGT GTGTTTAGCT CAGCACGAGA GCAATTATAA CACACGAGCT   180
ACAAACTACA ACCGTGGAGA CCAAAGCACT GACTATGGGA TATTTCAGAT CAATAGCCGA   240
TACTGGTGTA ATGATGGCAA AACCCCAAGA GCTGTGAATG CCTGTGGGAT CAATTGCAGT   300
GCTCTGCTGC AGGATGACAT CACTGCAGCC ATACAATGTG CAAAGAGGGT GGTGAGAGAT   360
CCCCAAGGCA TTCGAGCATG GGTGGCATGG CGAGCACACT GTCAAAACCG AGATCTGTCC   420
CAGTATATTC GGAACTGCGG AGTCTGA                                       447