Sequences for MACNE11648

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MACNE11648 (A0A2K6C9Z0)

E Macaca nemestrina | Syndecan [SDC2]

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Orthologs 147

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MACNE11649	165			4	A0A2K6C9Y2
	MACNE11648 reference isoform	201			5	A0A2K6C9Z0

Protein Sequence

Download: Fasta

MRRAWILLTL GLVACVSAES RAELTSDKDM YLDNSSIEEA SGVYPIDDDD YASASGSGAD    60
EDVESPELTT SRPLPKIPFT SAAPNVETTT LNIQNKIPAQ TKSPEETDKE KVHLSDSERK   120
MDPSEEDTNV YTEKHSDSLF KRTEVLAAVI AGGVIGFLFA IFLILLLVYR MRKKDEGSYD   180
LGERKPSSAA YQKAPTKEFY A                                             201

cDNA Sequence

Download: Fasta

ATGCGGCGCG CGTGGATCCT GCTCACCTTG GGCTTGGTGG CCTGCGTGTC GGCGGAATCG    60
AGAGCAGAGC TGACATCCGA TAAAGACATG TACCTTGACA ACAGCTCCAT TGAAGAAGCT   120
TCAGGAGTGT ATCCTATTGA TGACGACGAC TATGCTTCTG CATCTGGCTC GGGAGCTGAT   180
GAGGATGTAG AGAGTCCAGA GCTGACAACA TCTCGACCAC TTCCAAAGAT ACCGTTCACT   240
AGTGCTGCTC CAAACGTGGA AACCACGACG CTGAATATAC AGAACAAGAT ACCTGCTCAG   300
ACGAAGTCAC CTGAAGAAAC TGATAAAGAG AAAGTTCACC TCTCTGACTC AGAAAGGAAA   360
ATGGACCCAT CTGAAGAAGA TACAAATGTG TATACTGAGA AACACTCAGA CAGTCTGTTT   420
AAACGGACAG AAGTCCTAGC AGCTGTCATT GCTGGTGGAG TTATTGGCTT TCTCTTTGCA   480
ATTTTTCTTA TCCTGCTGTT GGTGTATCGC ATGAGAAAGA AGGATGAAGG AAGCTATGAC   540
CTTGGAGAAC GCAAACCATC CAGTGCTGCT TACCAGAAGG CACCTACTAA GGAGTTTTAT   600
GCTTAA                                                              606