Sequences for LOXAF03107

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene LOXAF03107 (G3SM55)

E Loxodonta africana | Dolichyl-diphosphooligosaccharide--protein glycosy [DAD1]

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Orthologs 730

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 10
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	LOXAF03107 reference isoform	113			2	G3SM55

Protein Sequence

Download: Fasta

MSASVVSVIS RFLEEYLSST PQRLKLLDAY LLYILLTGAL QFGYCLLVGT FPFNSFLSGF    60
ISCVGSFILA VCLRIQINPQ NKADFQGISP ERAFADFLFA STILHLVVMN FVG          113

cDNA Sequence

Download: Fasta

ATGTCGGCGT CGGTAGTGTC GGTGATCTCG CGGTTCTTAG AAGAGTACTT GAGCTCTACT    60
CCGCAGCGTC TGAAGTTGCT GGACGCGTAC CTCCTGTATA TACTGCTGAC CGGGGCGCTG   120
CAGTTCGGTT ATTGTCTTCT CGTGGGGACT TTTCCTTTCA ACTCTTTCCT CTCGGGCTTC   180
ATCTCTTGTG TGGGAAGCTT CATCCTGGCG GTTTGTCTGA GAATACAGAT CAACCCACAG   240
AACAAAGCGG ATTTCCAAGG CATCTCCCCG GAGCGAGCCT TTGCTGATTT TCTCTTTGCC   300
AGCACCATCT TGCACCTTGT TGTGATGAAC TTCGTTGGCN NN                      342