Sequences for LATCH08303

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene LATCH08303 (H3AF00)

E Latimeria chalumnae | Glucosamine-6-phosphate isomerase [GNPDA2]

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Orthologs 1426

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 258
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	LATCH08303 reference isoform	239			5	H3AF00

Protein Sequence

Download: Fasta

MGCYKKLIEY YKSGDLSFKY VKTFNMDEYV GLSRDHPESY HSYMWNNFFK HIDIDPNNAH    60
ILDGNAADLQ EECDAFEQKI AEAGGIELFV GGIGPDGHIA FNEPGSSLVS RTRVKTLAKD   120
TILANARFFN GDLSKVPTMA LTVGVGTVMD SREVMILITG AHKAFALYKA IEDGVNHMWT   180
VSAFQQHPHT IFVCDEDATL ELRVKTVKYF IGLMHVHNKL VDPLYSMKEH GNYKGQSEQ    239

cDNA Sequence

Download: Fasta

ATGGGATGTT ATAAAAAGCT AATCGAGTAT TACAAAAGTG GAGATCTTTC CTTCAAATAT    60
GTTAAAACAT TCAACATGGA TGAATATGTG GGACTTTCCA GGGATCACCC TGAAAGTTAC   120
CATTCCTACA TGTGGAACAA CTTCTTCAAG CACATCGATA TAGATCCCAA TAATGCTCAC   180
ATTCTCGATG GCAACGCAGC AGACCTGCAA GAGGAGTGTG ATGCTTTTGA ACAGAAGATT   240
GCCGAGGCTG GAGGAATAGA GCTGTTTGTT GGCGGTATTG GCCCTGATGG ACATATTGCC   300
TTCAATGAAC CAGGATCTAG CCTTGTATCT AGAACAAGAG TAAAGACTTT AGCAAAGGAC   360
ACCATTTTGG CGAATGCTAG ATTCTTTAAT GGAGATCTGT CCAAAGTGCC TACGATGGCA   420
CTAACAGTAG GTGTAGGGAC AGTGATGGAC TCAAGAGAGG TCATGATTCT TATTACTGGC   480
GCACATAAAG CATTTGCTTT ATACAAAGCA ATAGAAGATG GGGTCAATCA CATGTGGACA   540
GTTTCGGCTT TTCAGCAACA CCCTCACACC ATCTTTGTTT GCGATGAGGA CGCTACTTTG   600
GAGCTTCGAG TTAAAACTGT CAAGTACTTT ATAGGTTTAA TGCATGTGCA TAATAAACTT   660
GTGGACCCAC TTTACAGTAT GAAAGAGCAT GGAAACTACA AAGGACAAAG TGAACAATGA   720