Sequences for JACJA16069

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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene JACJA16069 (A0A8C5K971)

E Jaculus jaculus | Transmembrane emp24 domain-containing protein 10 [LOC101612201]

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Orthologs 1456

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1077
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	JACJA16069 reference isoform	219			1	A0A8C5K971

Protein Sequence

Download: Fasta

MSGSCGPLSW RGRGPLALVC LFLLVPSSVL AISFHLPINS RKCLREEIHK DLLVTGAYEI    60
TDQSGGAGGL RTHLKITDSA GHILYSKEDA SKGKFAFTTE DYDMFEVCFE SKGTGRIPDQ   120
LVILDMKHGV EAKNYEEIAK VEKLKPLEVE LRRLEDLSES IVNDFAYMKK REEEMQDTNE   180
STNTRVLYFS IFSMFCLIGL ATWQVFYLCR FFKAKKLIE                          219

cDNA Sequence

Download: Fasta

ATGTCTGGTT CATGCGGCCC ACTCTCCTGG CGTGGCCGTG GCCCGTTGGC GTTGGTGTGT    60
CTGTTCCTGC TCGTCCCCAG CTCGGTCCTG GCCATCTCCT TCCACCTGCC CATTAACTCT   120
CGCAAGTGTC TGCGCGAGGA GATCCACAAG GACCTGCTGG TCACCGGCGC CTACGAGATC   180
ACCGACCAGT CCGGGGGCGC CGGCGGCCTG CGCACCCACC TCAAGATCAC AGATTCTGCT   240
GGGCACATTC TATACTCCAA AGAGGATGCA TCCAAAGGGA AGTTTGCCTT TACGACGGAA   300
GATTATGATA TGTTTGAAGT GTGTTTTGAG AGCAAGGGAA CAGGGCGGAT ACCTGACCAA   360
CTCGTGATTC TAGACATGAA ACACGGAGTG GAGGCAAAAA ATTATGAAGA GATTGCAAAA   420
GTCGAGAAAC TCAAGCCATT AGAGGTGGAG CTCCGACGCC TGGAAGACCT TTCAGAATCC   480
ATTGTTAATG ATTTTGCCTA TATGAAGAAG CGGGAGGAGG AGATGCAGGA CACCAATGAG   540
TCAACAAACA CCCGAGTACT GTACTTCAGC ATCTTCTCAA TGTTCTGCCT CATTGGACTA   600
GCTACCTGGC AGGTCTTCTA CCTGTGTCGC TTCTTCAAGG CCAAGAAGTT GATTGAGTAA   660