Sequences for ICTPU34085

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ICTPU34085 (A0A2D0RIA0)

E Ictalurus punctatus | Transmembrane emp24 domain-containing protein 9 [tmed9]

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Orthologs 1475

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1320
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	ICTPU34085 reference isoform	222			5	A0A2D0RIA0

Protein Sequence

Download: Fasta

MVLKMQLMLG TLLFFNVCCS LVSALYFHIG ETEKKCFIEE IPDETMIIGN YRTQLYDKQS    60
ESYLPATPGL GMFVEVKDPD EKVILSRQYG SEGRFTFTSH TPGEHQICLH SNSSKFSLFA   120
GGMLRVHLDI QVGEHANNYA EIAAKDKLTE LQLRVRQLVE QVDQIQKEQN YQRYREERFR   180
QTSESTNQRV LWWSIVQTLI LVAIGFWQMR HLKSFFEAKK LV                      222

cDNA Sequence

Download: Fasta

ATGGTGTTGA AAATGCAGTT AATGCTAGGC ACGTTGCTGT TTTTTAATGT TTGCTGCAGT    60
CTCGTCTCTG CACTGTACTT TCACATCGGC GAGACTGAAA AGAAATGCTT CATTGAAGAA   120
ATTCCGGATG AAACCATGAT AATCGGAAAC TACCGGACGC AGCTGTATGA CAAGCAGTCA   180
GAATCGTACC TGCCTGCCAC ACCAGGGCTC GGGATGTTTG TGGAAGTTAA AGACCCTGAT   240
GAGAAGGTGA TCCTGTCTCG TCAGTATGGG TCAGAAGGCC GCTTCACCTT CACCTCCCAC   300
ACACCCGGAG AACACCAGAT CTGTTTGCAC TCCAACTCCT CCAAATTTTC TCTCTTCGCT   360
GGTGGAATGC TTCGTGTTCA TCTGGACATC CAAGTGGGCG AGCATGCGAA TAACTATGCA   420
GAGATCGCTG CAAAAGACAA GCTGACCGAG CTGCAGCTGA GAGTGCGCCA GCTTGTGGAG   480
CAGGTTGATC AGATCCAGAA GGAGCAGAAC TATCAGAGAT ACCGTGAAGA GCGTTTCAGA   540
CAGACCAGTG AGAGCACCAA CCAGAGAGTC CTGTGGTGGT CTATTGTTCA GACGCTGATC   600
CTGGTGGCTA TCGGTTTCTG GCAGATGAGA CATCTTAAGA GCTTCTTTGA AGCCAAGAAA   660
TTAGTATAA                                                           669