Sequences for ICTPU30538

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ICTPU30538 (A0A2D0R474)

E Ictalurus punctatus | V-set domain containing T-cell activation inhibito [vtcn1]

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Orthologs 179

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	ICTPU30538 reference isoform	274			5	A0A2D0R474

Protein Sequence

Download: Fasta

MASIGQIIFW SMIVLIFVMA GLLILLLVIA FAASQGSVLT STPFIVGNLG QDVILGCRFQ    60
TKTGKDVSSG VSITWQKDGL TGVVYRFQNN AAQLQEQNSQ FKNRVKLFPD AIPTGNASLL   120
LMGVRLEDAG VYRCSVTTSG VTGTVSIHLR VGAFSAPNIT RSNNSLIASA QRWLPKPEVT   180
WTDQNGKQLN SSTQFYNVTL GIVQVTSNLQ VQVTEETYTC VIQNALVTTA SKATVTGNGN   240
EVLTVTDFIF NSSPNIVGTH VISTACILFC VSGW                               274

cDNA Sequence

Download: Fasta

ATGGCTTCGA TCGGACAAAT CATCTTTTGG AGCATGATTG TCCTCATATT TGTAATGGCT    60
GGACTTCTAA TTCTCCTTTT GGTTATTGCA TTTGCAGCAT CCCAGGGCTC TGTGTTGACT   120
AGTACACCTT TTATAGTGGG TAACCTTGGA CAGGATGTGA TCCTAGGCTG CAGATTCCAA   180
ACCAAAACTG GCAAGGATGT TTCTTCTGGT GTGTCGATCA CCTGGCAGAA GGACGGTCTT   240
ACTGGGGTAG TTTATCGATT CCAGAACAAT GCAGCTCAGT TACAGGAGCA GAACTCGCAG   300
TTTAAAAACA GAGTTAAACT CTTCCCAGAT GCTATCCCGA CAGGCAATGC TTCCCTTCTC   360
TTGATGGGAG TAAGGCTGGA GGATGCCGGA GTGTATCGCT GCAGTGTGAC CACTTCTGGA   420
GTCACGGGTA CAGTCAGCAT TCATCTCAGA GTGGGTGCTT TCTCAGCTCC CAATATAACC   480
AGATCAAACA ACAGCCTGAT AGCCTCCGCT CAGAGATGGC TTCCCAAACC TGAAGTAACC   540
TGGACAGACC AGAATGGAAA ACAGTTAAAC AGTAGCACTC AGTTTTACAA TGTAACTCTG   600
GGGATTGTAC AAGTAACGAG CAACCTCCAA GTCCAGGTGA CTGAAGAGAC CTACACCTGT   660
GTCATCCAGA ATGCTCTCGT CACCACTGCC TCTAAGGCAA CAGTTACAGG TAATGGAAAT   720
GAAGTTTTGA CAGTAACCGA CTTCATATTT AATTCATCAC CAAACATCGT CGGTACACAT   780
GTGATCAGCA CAGCCTGCAT CCTTTTCTGT GTGTCGGGAT GGTGA                   825