Sequences for ICTPU19851

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ICTPU19851 (A0A2D0PZP6)

E Ictalurus punctatus | Chromogranin-A [chga]

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Orthologs 165

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	ICTPU19851 reference isoform	299			8	A0A2D0PZP6

Protein Sequence

Download: Fasta

MKAPGCALFL LLLQCVSSLP VSHTRLEHED VEVIKCVVEV LADALSKPHS VPVSQRCLET    60
LRTDDRLVTV LRHQNFLQEL QDIAGEGANE RSEKGIEERP DHAQDLQDPA DQSMLLAVLT   120
PGETVKERGA EEEKEQESQV NGIITSHEEM NEGDEKGEEA VRKKTESSEE DEEDEAGAAG   180
APEHKRVEEE SQEAEQEAEQ EEEQEESVEK SKGGVGKQKH LSRSREPVRR RAYGQQEAPH   240
HSKEAWKSPE EEELRMMAGR DPEEGSATKK TEDAEMESLA VMENELESMA QKLHKLRHG    299

cDNA Sequence

Download: Fasta

ATGAAAGCTC CGGGATGCGC TCTGTTCCTG CTGCTGCTCC AGTGCGTTTC CTCTCTGCCC    60
GTGTCTCACA CTCGCCTGGA GCACGAGGAC GTCGAGGTGA TTAAGTGTGT AGTGGAGGTT   120
CTGGCTGACG CGCTGAGCAA ACCTCACTCC GTCCCCGTGT CTCAGCGGTG TCTGGAGACC   180
CTCAGGACCG ATGACAGACT CGTGACCGTG CTGCGTCACC AGAACTTCCT TCAGGAGCTG   240
CAGGACATCG CTGGAGAAGG AGCCAATGAG AGATCTGAGA AGGGAATAGA GGAACGACCT   300
GACCACGCCC AAGACCTCCA GGACCCTGCA GATCAGTCCA TGCTGTTGGC CGTCCTGACA   360
CCGGGAGAGA CGGTGAAGGA GAGAGGAGCA GAGGAGGAGA AGGAACAGGA GTCTCAGGTG   420
AATGGTATCA TCACCAGCCA CGAGGAGATG AACGAGGGAG ACGAGAAGGG AGAAGAAGCG   480
GTGAGGAAGA AAACCGAAAG CAGTGAGGAA GACGAAGAAG ATGAGGCAGG AGCAGCCGGA   540
GCTCCAGAAC ACAAACGTGT GGAGGAGGAG AGTCAGGAGG CGGAGCAGGA GGCGGAGCAG   600
GAGGAGGAGC AGGAGGAGTC TGTGGAGAAG AGTAAGGGAG GTGTGGGAAA GCAGAAACAC   660
TTGAGTCGGA GCAGAGAGCC GGTCCGTCGC AGGGCTTACG GCCAGCAGGA GGCGCCGCAC   720
CACTCCAAGG AGGCGTGGAA GAGCCCTGAG GAGGAGGAGC TTCGGATGAT GGCAGGAAGA   780
GACCCTGAGG AGGGCAGTGC AACCAAGAAG ACTGAGGACG CCGAGATGGA GAGTTTGGCT   840
GTGATGGAGA ACGAGTTGGA GAGCATGGCT CAGAAACTGC ACAAGCTGCG ACATGGCTGA   900