Sequences for HYPSM02509

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Category	Prefixes
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HOGs	hog, sequence
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Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HYPSM02509 (rluC)

B Hyphomicrobium sp. (strain MC1)

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Orthologs 3261

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 3909
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HYPSM02509 reference isoform	331			1	rluC

Protein Sequence

Download: Fasta

MTDTPSKVET LRVAHGEADM RLDRWFRVHF PEVGYTYLQK LLRSGQVRVD SKRAQANDRL    60
NVGAEIRVPA IVRQPKKSGP GLQAPPGVSK GDRDTIEKMI LFEDDYVLVL NKPFGLAVQG   120
GTGTKKHIDG MLEGMADRFG GERPRLVHRL DRDTTGVLLV AKTREAAAKL GRTFQTRSAA   180
KTYWALVKGV PKPPQGKVEA ALVKASGPDG DRVRKAKPGE QDVAMHATTH YSVIDRAAHK   240
TAWVSLKPVT GRQHQLRAHM HLIGHPIVGD NKYEGDVHMP AENIDKKLHL HARRLVIPHP   300
KGGKTIDVTA PLPDHMRRTW ELLGFDEEKF E                                  331

cDNA Sequence

Download: Fasta

ATGACCGACA CGCCTTCAAA AGTCGAAACG CTGCGCGTCG CGCACGGCGA GGCCGATATG    60
CGCCTCGACC GCTGGTTTCG CGTGCATTTC CCGGAGGTCG GCTACACCTA TCTCCAGAAG   120
CTTCTGCGTT CGGGGCAGGT CCGCGTCGAT TCCAAGCGCG CGCAGGCGAA CGACCGTCTC   180
AATGTCGGCG CAGAAATCCG CGTTCCTGCG ATCGTTCGTC AGCCCAAAAA GTCGGGGCCG   240
GGACTGCAGG CCCCTCCCGG CGTCTCAAAG GGCGACCGCG ATACCATCGA AAAGATGATC   300
CTGTTCGAGG ATGACTACGT TCTCGTTCTG AATAAGCCGT TCGGCCTCGC GGTCCAGGGC   360
GGCACCGGTA CGAAGAAGCA CATCGACGGC ATGCTCGAAG GCATGGCCGA CCGCTTCGGC   420
GGCGAGCGTC CGCGGCTGGT ACATCGCCTT GACCGCGACA CGACCGGCGT GCTGCTCGTT   480
GCCAAAACGC GCGAGGCGGC AGCGAAGCTC GGGCGGACGT TCCAGACACG CTCCGCTGCG   540
AAAACCTATT GGGCGCTCGT GAAGGGCGTT CCGAAGCCGC CGCAGGGCAA GGTCGAGGCA   600
GCACTCGTCA AAGCCTCAGG ACCTGACGGC GATCGCGTCC GCAAGGCAAA ACCCGGCGAG   660
CAGGACGTCG CGATGCACGC GACCACACAC TATTCCGTCA TAGATCGCGC TGCGCACAAA   720
ACGGCGTGGG TATCACTGAA GCCGGTGACC GGCCGCCAGC ATCAGCTCCG CGCGCACATG   780
CATCTCATCG GCCATCCGAT CGTCGGCGAC AACAAGTACG AGGGCGACGT TCACATGCCC   840
GCCGAGAATA TCGATAAGAA GCTTCACTTG CACGCGCGCC GCCTCGTTAT TCCGCATCCG   900
AAAGGCGGAA AGACCATCGA CGTTACCGCG CCGTTGCCCG ATCACATGCG GCGCACTTGG   960
GAACTCCTGG GTTTCGACGA AGAAAAGTTC GAATAG                             996