Sequences for HUMAN97616

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN97616 (CAR19_HUMAN)

E Homo sapiens | Caspase recruitment domain-containing protein 19 [CARD19]

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Orthologs 178

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 2
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN97617	228			3	CAR19_HUMAN
	HUMAN97616 reference isoform	183			6	CAR19_HUMAN

Protein Sequence

Download: Fasta

MTDQTYCDRL VQDTPFLTGH GRLSEQQVDR IILQLNRYYP QILTNKEAEK FRNPKASLRV    60
RLCDLLSHLQ RSGERDCQEF YRALYIHAQP LHSRLPSRHA LQNSDCTELD SGSQSGELSN   120
RGPMSFLAGL GLAVGLALLL YCYPPDPKGL PGTRRVLGFS PVIIDRHVSR YLLAFLADDL   180
GGL                                                                 183

cDNA Sequence

Download: Fasta

ATGACAGATC AGACCTATTG TGACCGCCTG GTGCAGGACA CGCCTTTCCT GACAGGCCAT    60
GGGCGCTTGA GTGAGCAGCA GGTGGACAGG ATCATCCTCC AGCTGAACCG TTACTACCCA   120
CAGATCCTTA CCAACAAGGA GGCGGAAAAG TTCCGGAACC CCAAGGCATC CTTGCGTGTG   180
CGGCTCTGTG ACCTCCTGAG CCACCTGCAG CGGAGCGGTG AGCGGGACTG CCAGGAGTTC   240
TACCGAGCCC TGTATATCCA TGCCCAGCCC CTGCACAGCC GCCTGCCCAG CCGCCACGCT   300
CTGCAGAACT CAGATTGCAC AGAGCTAGAC TCGGGCAGCC AGAGCGGCGA GCTGAGTAAC   360
AGGGGACCCA TGAGCTTCCT GGCTGGCCTG GGCCTTGCTG TGGGACTGGC CCTGCTCCTG   420
TACTGCTATC CGCCAGACCC CAAGGGCCTG CCAGGGACCC GGCGCGTCCT CGGTTTCTCG   480
CCTGTCATCA TCGACAGACA TGTCAGCCGC TACCTGCTGG CCTTCCTGGC AGATGACCTA   540
GGGGGGCTCT GA                                                       552