Sequences for HUMAN94870

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN94870 (RIDA_HUMAN)

E Homo sapiens | 2-iminobutanoate/2-iminopropanoate deaminase [RIDA]

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Orthologs 2970

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 248
Gene information
GO Annotations
Sequences/Isoforms 4
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN94871	42			2	E5RIP8
	HUMAN94872	148			6	H0YB34
	HUMAN94873	127			5	H0YBX3
	HUMAN94870 reference isoform	137			6	RIDA_HUMAN

Protein Sequence

Download: Fasta

MSSLIRRVIS TAKAPGAIGP YSQAVLVDRT IYISGQIGMD PSSGQLVSGG VAEEAKQALK    60
NMGEILKAAG CDFTNVVKTT VLLADINDFN TVNEIYKQYF KSNFPARAAY QVAALPKGSR   120
IEIEAVAIQG PLTTASL                                                  137

cDNA Sequence

Download: Fasta

ATGTCGTCCT TGATCAGAAG GGTGATCAGC ACCGCGAAAG CCCCAGGGGC CATTGGACCC    60
TACAGTCAAG CTGTATTAGT CGACAGGACC ATTTACATTT CAGGACAGAT AGGCATGGAC   120
CCTTCAAGTG GACAGCTTGT GTCAGGAGGG GTAGCAGAAG AAGCTAAACA AGCTCTTAAA   180
AACATGGGTG AAATTCTGAA AGCTGCAGGC TGTGACTTCA CTAACGTGGT GAAAACAACT   240
GTTCTTCTGG CTGACATAAA TGACTTCAAT ACTGTCAATG AAATCTACAA ACAGTATTTC   300
AAGAGTAATT TTCCTGCTAG AGCTGCTTAC CAAGTTGCTG CTTTACCCAA AGGCAGCCGA   360
ATTGAAATTG AAGCAGTAGC TATCCAAGGA CCACTGACAA CGGCATCACT ATAA         414