Sequences for HUMAN64665

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN64665 (SFT2C_HUMAN)

E Homo sapiens | Vesicle transport protein SFT2C [SFT2D3]

‹

Orthologs 292

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 103
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN64665 reference isoform	215			1	SFT2C_HUMAN

Protein Sequence

Download: Fasta

MADLHRQLQE YLAQGKAGGP AAAEPLLAAE KAEEPGDRPA EEWLGRAGLR WTWARSPAES    60
AAAGLTCLPS VTRGQRLAAG GGCLLLAALC FGLAALYAPV LLLRARKFAL LWSLGSALAL   120
AGSALLRGGA ACGRLLRCEE APSRPALLYM AALGATLFAA LGLRSTLLTV LGAGAQVAAL   180
LAALVGLLPW GGGTALRLAL GRLGRGAGLA KVLPV                              215

cDNA Sequence

Download: Fasta

ATGGCGGACC TCCACCGCCA GCTGCAGGAG TACCTGGCGC AGGGGAAAGC TGGCGGCCCG    60
GCGGCCGCGG AGCCGCTGCT CGCCGCGGAG AAGGCGGAGG AGCCCGGGGA CCGGCCGGCG   120
GAGGAGTGGC TGGGCCGCGC GGGCTTGCGC TGGACGTGGG CGCGGAGCCC TGCGGAGTCG   180
GCAGCGGCCG GCCTGACGTG CCTCCCGAGC GTGACGCGCG GGCAGCGGCT GGCGGCGGGC   240
GGCGGGTGCC TGCTGCTGGC TGCACTGTGT TTCGGCCTAG CCGCGCTCTA CGCACCGGTG   300
TTGCTGCTGC GCGCGCGCAA GTTCGCGCTG CTCTGGTCAC TGGGCTCGGC GCTGGCGTTG   360
GCGGGAAGCG CGCTGCTGCG GGGCGGCGCG GCGTGCGGAC GCCTGCTGCG CTGCGAAGAA   420
GCGCCGTCCC GGCCCGCGCT GCTCTACATG GCAGCGCTGG GCGCCACGCT GTTCGCCGCG   480
CTGGGCCTTC GCAGCACGCT GCTCACGGTG CTGGGCGCGG GCGCGCAGGT GGCCGCGCTG   540
CTGGCCGCGC TGGTTGGGCT GCTGCCCTGG GGCGGCGGCA CCGCGCTGCG CCTCGCACTG   600
GGTCGCCTGG GCCGCGGCGC CGGCCTCGCC AAGGTGCTGC CCGTGTGA                648