Sequences for HUMAN34635

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN34635 (COPZ2_HUMAN)

E Homo sapiens | Coatomer subunit zeta-2 [COPZ2]

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Orthologs 783

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 582
Gene information
GO Annotations
Sequences/Isoforms 7
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN34632	45			3	J3QL73
	HUMAN34633	56			3	J3QLS7
	HUMAN34634	141			7	J3KRJ9
	HUMAN34636	116			6	J3QS21
	HUMAN34637	79			4	J3QQQ5
	HUMAN34638	9			1	ENSG00000005243.10
	HUMAN34635 reference isoform	210			9	COPZ2_HUMAN

Protein Sequence

Download: Fasta

MQRPEAWPRP HPGEGAAAAQ AGGPAPPARA GEPSGLRLQE PSLYTIKAVF ILDNDGRRLL    60
AKYYDDTFPS MKEQMVFEKN VFNKTSRTES EIAFFGGMTI VYKNSIDLFL YVVGSSYENE   120
LMLMSVLTCL FESLNHMLRK NVEKRWLLEN MDGAFLVLDE IVDGGVILES DPQQVIQKVN   180
FRADDGGLTE QSVAQVLQSA KEQIKWSLLK                                    210

cDNA Sequence

Download: Fasta

ATGCAGCGGC CCGAGGCCTG GCCACGTCCG CACCCGGGGG AGGGGGCCGC GGCGGCCCAG    60
GCCGGGGGCC CGGCGCCGCC TGCTCGAGCC GGGGAGCCCT CGGGGCTGCG GTTGCAGGAA   120
CCTTCCCTCT ACACCATCAA GGCTGTTTTC ATCCTAGATA ATGACGGGCG CCGGCTGCTG   180
GCCAAGTATT ATGATGACAC ATTCCCCTCC ATGAAGGAGC AGATGGTTTT CGAGAAAAAT   240
GTCTTCAACA AGACCAGCCG GACTGAGAGT GAGATTGCAT TTTTTGGGGG TATGACCATC   300
GTCTACAAGA ACAGCATTGA CCTCTTCCTA TACGTGGTGG GCTCATCCTA CGAGAATGAG   360
CTGATGCTCA TGTCTGTTCT CACCTGCCTG TTTGAGTCTC TGAACCACAT GTTAAGGAAG   420
AACGTGGAGA AGCGCTGGTT GCTGGAGAAC ATGGACGGAG CCTTCTTGGT GCTGGACGAG   480
ATTGTGGATG GCGGTGTGAT TCTGGAGAGT GACCCCCAGC AAGTGATCCA GAAGGTGAAT   540
TTTAGGGCAG ATGATGGCGG CTTGACTGAA CAGAGTGTGG CCCAGGTTCT TCAGTCTGCC   600
AAGGAACAAA TTAAATGGTC GTTATTGAAA TGA                                633