Sequences for HUMAN26540

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN26540 (CHSP1_HUMAN)

E Homo sapiens | Calcium-regulated heat-stable protein 1 [CARHSP1]

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Orthologs 320

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 291
Gene information
GO Annotations
Sequences/Isoforms 16
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN26538 reference isoform	147			3	CHSP1_HUMAN
	HUMAN26539	147			3	CHSP1_HUMAN
	HUMAN26541	147			3	CHSP1_HUMAN
	HUMAN26542	147			3	CHSP1_HUMAN
	HUMAN26543	147			3	CHSP1_HUMAN
	HUMAN26544	147			3	CHSP1_HUMAN
	HUMAN26545	147			3	CHSP1_HUMAN
	HUMAN26546	147			3	CHSP1_HUMAN
	HUMAN26547	131			3	H3BNU9
	HUMAN26548	125			3	H3BPY5
	HUMAN26549	124			3	H3BSW7
	HUMAN26550	112			3	H3BSW7
	HUMAN26551	114			4	H3BQY0
	HUMAN26552	94			2	H3BTK3
	HUMAN26553	71			2	H3BTK3
	HUMAN26540	147			3	CHSP1_HUMAN

Protein Sequence

Download: Fasta

MSSEPPPPPQ PPTHQASVGL LDTPRSRERS PSPLRGNVVP SPLPTRRTRT FSATVRASQG    60
PVYKGVCKCF CRSKGHGFIT PADGGPDIFL HISDVEGEYV PVEGDEVTYK MCSIPPKNEK   120
LQAVEVVITH LAPGTKHETW SGHVISS                                       147

cDNA Sequence

Download: Fasta

ATGTCATCTG AGCCTCCCCC ACCACCACAG CCCCCCACCC ATCAAGCTTC AGTCGGGCTG    60
CTGGACACCC CTCGGAGCCG TGAGCGCTCA CCATCCCCTC TGCGGGGCAA CGTGGTCCCA   120
AGCCCACTGC CCACTCGCCG GACGAGGACC TTCTCGGCGA CGGTGCGGGC TTCACAGGGC   180
CCCGTCTACA AAGGAGTCTG CAAATGCTTC TGCCGGTCCA AGGGCCATGG CTTCATTACT   240
CCAGCTGATG GCGGCCCCGA CATCTTCCTG CACATCTCTG ATGTGGAAGG GGAGTATGTC   300
CCAGTGGAAG GCGACGAGGT CACCTATAAA ATGTGCTCCA TCCCACCCAA GAATGAGAAG   360
CTGCAGGCCG TGGAGGTCGT CATCACTCAC CTGGCACCAG GCACCAAGCA TGAGACCTGG   420
TCTGGACATG TCATCAGCTC CTAG                                          444