Sequences for HUMAN25718

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN25718 (C9JJ19)

E Homo sapiens | Mitochondrial ribosomal protein S34 [MRPS34]

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Orthologs 164

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 2
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN25719	218			3	RT34_HUMAN
	HUMAN25718 reference isoform	225			3	C9JJ19

Protein Sequence

Download: Fasta

MARKKVRPRL IAELARRVRA LREQLNRPRD SQLYAVDYET LTRPFSGRRL PVRAWADVRR    60
ESRLLQLLGR LPLFGLGRLV TRKSWLWQHD EPCYWRLTRV RPDYTAQNLD HGKAWGILTF   120
KDASFSSSGK TESEAREIEH VMYHDWRLVP KHEEEAFTAF TPAPEDSLAS VPYPPLLRAM   180
IIAERQKNGD TSTEEPMLNV QRIRMEPWDY PAKQEDKGRA KGTPV                   225

cDNA Sequence

Download: Fasta

ATGGCGCGGA AGAAGGTGCG TCCGCGGCTG ATCGCGGAGC TGGCCCGCCG CGTGCGCGCC    60
CTGCGGGAGC AACTGAACAG GCCGCGCGAC TCCCAGCTCT ACGCGGTGGA CTACGAGACC   120
TTGACGCGGC CGTTCTCTGG ACGCCGGCTG CCGGTCCGGG CCTGGGCCGA CGTGCGCCGC   180
GAGAGCCGCC TCTTGCAGCT GCTCGGCCGC CTCCCGCTCT TCGGCCTGGG CCGCCTGGTC   240
ACGCGCAAGT CCTGGCTGTG GCAGCACGAC GAGCCGTGCT ACTGGCGCCT CACGCGGGTG   300
CGGCCCGACT ACACGGCGCA GAACTTGGAC CACGGGAAGG CCTGGGGCAT CCTGACCTTC   360
AAAGACGCCT CTTTTTCTTC ATCAGGGAAG ACTGAGAGCG AGGCGCGGGA GATCGAACAC   420
GTCATGTACC ATGACTGGCG GCTGGTGCCC AAGCACGAGG AGGAGGCCTT CACCGCGTTC   480
ACGCCGGCGC CGGAAGACAG CCTGGCCTCC GTGCCGTACC CGCCTCTCCT CCGGGCCATG   540
ATTATCGCAG AACGACAGAA AAATGGAGAC ACAAGCACCG AGGAGCCCAT GCTGAATGTG   600
CAGAGGATAC GCATGGAACC CTGGGATTAC CCTGCAAAAC AGGAAGACAA AGGAAGGGCC   660
AAGGGCACCC CCGTCTAG                                                 678