Sequences for HUMAN25283

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN25283 (RU2A_HUMAN)

E Homo sapiens | U2 small nuclear ribonucleoprotein A' [SNRPA1]

‹

Orthologs 122449

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 131552
Gene information
GO Annotations
Sequences/Isoforms 5
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN25284	154			6	H0YKK0
	HUMAN25285	89			4	H0YLR3
	HUMAN25286	142			5	H0YMA0
	HUMAN25287	154			6	H0YKK0
	HUMAN25283 reference isoform	255			9	RU2A_HUMAN

Protein Sequence

Download: Fasta

MVKLTAELIE QAAQYTNAVR DRELDLRGYK IPVIENLGAT LDQFDAIDFS DNEIRKLDGF    60
PLLRRLKTLL VNNNRICRIG EGLDQALPCL TELILTNNSL VELGDLDPLA SLKSLTYLSI   120
LRNPVTNKKH YRLYVIYKVP QVRVLDFQKV KLKERQEAEK MFKGKRGAQL AKDIARRSKT   180
FNPGAGLPTD KKKGGPSPGD VEAIKNAIAN ASTLAEVERL KGLLQSGQIP GRERRSGPTD   240
DGEEEMEEDT VTNGS                                                    255

cDNA Sequence

Download: Fasta

ATGGTCAAGC TGACGGCGGA GCTGATCGAG CAGGCGGCGC AGTACACCAA CGCGGTGCGC    60
GACCGGGAGC TGGACCTCCG GGGGTATAAA ATTCCCGTCA TTGAAAATCT AGGTGCTACG   120
TTAGACCAGT TTGATGCTAT TGATTTTTCT GACAATGAGA TCAGGAAACT GGATGGTTTT   180
CCTTTGTTGA GAAGACTGAA AACATTGTTA GTGAACAACA ACAGAATATG CCGTATAGGT   240
GAGGGACTTG ATCAGGCTCT GCCCTGTCTG ACAGAACTCA TTCTCACCAA TAATAGTCTC   300
GTGGAACTGG GTGATCTGGA CCCTCTGGCA TCTCTCAAAT CGCTGACTTA CCTAAGTATC   360
CTAAGAAATC CGGTAACCAA TAAGAAGCAT TACAGATTGT ATGTGATTTA TAAAGTTCCG   420
CAAGTCAGAG TACTGGATTT CCAGAAAGTG AAACTAAAAG AGCGTCAGGA AGCAGAGAAA   480
ATGTTCAAGG GCAAACGGGG TGCACAGCTT GCAAAGGATA TTGCCAGGAG AAGCAAAACT   540
TTTAATCCAG GTGCTGGTTT GCCAACTGAC AAAAAGAAAG GTGGGCCATC TCCAGGGGAT   600
GTAGAAGCAA TCAAGAATGC CATAGCAAAT GCTTCAACTC TGGCTGAAGT GGAGAGGCTG   660
AAGGGGTTGC TGCAGTCTGG TCAGATCCCT GGCAGAGAAC GCAGATCAGG GCCCACTGAT   720
GATGGTGAAG AAGAGATGGA AGAAGACACA GTCACAAACG GGTCCTGA                768