Sequences for HUMAN15390

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN15390 (F8VXU5)

E Homo sapiens | Vacuolar protein sorting-associated protein 29 [VPS29]

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Orthologs 840

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 143
Gene information
GO Annotations
Sequences/Isoforms 7
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN15388 reference isoform	182			4	VPS29_HUMAN
	HUMAN15389	186			5	VPS29_HUMAN
	HUMAN15391	87			2	ENSG00000111237.19
	HUMAN15392	87			2	ENSG00000111237.19
	HUMAN15393	214			5	F8VXU5
	HUMAN15394	87			2	ENSG00000111237.19
	HUMAN15390	214			5	F8VXU5

Protein Sequence

Download: Fasta

MLVLVLGDLH IPHRCNSLPA KFKKLLVPGK IQHILCTGNL CTKESYDYLK TLAGDVHIVR    60
GDFDENLNYP EQKVVTVGQF KIGLIHGHQV IPWGDMASLA LLQRQFDVDI LISGHTHKFE   120
AFEHENKFYI NPGSATGAYN ALETNIIPSF VLMDIQASTV VTYVYQLIGD DVKVERIEYK   180
KP                                                                  182

cDNA Sequence

Download: Fasta

ATGTTGGTGT TGGTATTAGG AGATCTGCAC ATCCCACACC GGTGCAACAG TTTGCCAGCT    60
AAATTCAAAA AACTCCTGGT GCCAGGAAAA ATTCAGCACA TTCTCTGCAC AGGAAACCTT   120
TGCACCAAAG AGAGTTATGA CTATCTCAAG ACTCTGGCTG GTGATGTTCA TATTGTGAGA   180
GGAGACTTCG ATGAGAATCT GAATTATCCA GAACAGAAAG TTGTGACTGT TGGACAGTTC   240
AAAATTGGTC TGATCCATGG ACATCAAGTT ATTCCATGGG GAGATATGGC CAGCTTAGCC   300
CTGTTGCAGA GGCAATTTGA TGTGGACATT CTTATCTCGG GACACACACA CAAATTTGAA   360
GCATTTGAGC ATGAAAATAA ATTCTACATT AATCCAGGTT CTGCCACTGG GGCATATAAT   420
GCCTTGGAAA CAAACATTAT TCCATCATTT GTGTTGATGG ATATCCAGGC TTCTACAGTG   480
GTCACCTATG TGTATCAGCT AATTGGAGAT GATGTGAAAG TAGAACGAAT CGAATACAAA   540
AAACCTTAA                                                           549