Sequences for HUMAN08857

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN08857 (CWC15_HUMAN)

E Homo sapiens | Spliceosome-associated protein CWC15 homolog [CWC15]

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Orthologs 116699

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 137382
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN08857 reference isoform	229			6	CWC15_HUMAN

Protein Sequence

Download: Fasta

MTTAARPTFE PARGGRGKGE GDLSQLSKQY SSRDLPSHTK IKYRQTTQDA PEEVRNRDFR    60
RELEERERAA AREKNRDRPT REHTTSSSVS KKPRLDQIPA ANLDADDPLT DEEDEDFEEE   120
SDDDDTAALL AELEKIKKER AEEQARKEQE QKAEEERIRM ENILSGNPLL NLTGPSQPQA   180
NFKVKRRWDD DVVFKNCAKG VDDQKKDKRF VNDTLRSEFH KKFMEKYIK               229

cDNA Sequence

Download: Fasta

ATGACAACAG CAGCCAGGCC AACCTTTGAA CCTGCCAGAG GTGGAAGGGG AAAAGGAGAA    60
GGTGATTTGA GCCAACTTTC AAAGCAGTAT TCAAGCAGAG ACCTACCCTC TCATACAAAG   120
ATAAAATACA GACAGACTAC TCAGGATGCC CCTGAAGAGG TTCGTAACCG TGACTTCAGG   180
AGAGAGTTGG AAGAAAGAGA GAGAGCTGCT GCAAGAGAGA AAAATAGGGA TCGTCCAACC   240
CGAGAACATA CAACCTCCTC TTCAGTGTCA AAAAAGCCAC GGTTAGACCA GATTCCTGCC   300
GCCAACCTTG ATGCAGATGA CCCTCTAACA GATGAGGAAG ATGAAGATTT TGAAGAAGAA   360
AGTGATGATG ATGATACTGC AGCTCTTCTT GCAGAACTGG AAAAAATTAA AAAAGAAAGA   420
GCTGAAGAGC AGGCCAGGAA GGAACAAGAA CAAAAAGCTG AAGAAGAGAG GATTCGTATG   480
GAAAACATTC TGAGCGGAAA CCCTCTCCTT AATCTCACTG GCCCATCCCA GCCTCAGGCC   540
AACTTCAAAG TTAAAAGAAG GTGGGATGAT GACGTTGTCT TCAAGAACTG TGCAAAAGGT   600
GTAGATGACC AGAAGAAAGA CAAAAGATTT GTAAATGACA CACTGCGATC TGAATTTCAC   660
AAAAAGTTCA TGGAGAAATA TATTAAATAG                                    690